Siqi Sun

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 70

Top Topics

Graphical Models

Intermediate Representations

Top Venues

Publications

Peng Zhou, Jianmin Wang, Chunyan Li, Zixu Wang, Yiping Liu, Siqi Sun, Jianxin Lin, Longyue Wang, Xiangxiang Zeng
Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model. CoRR (2024)
Yi Dong, Ronghui Mu, Yanghao Zhang, Siqi Sun, Tianle Zhang, Changshun Wu, Gaojie Jin, Yi Qi, Jinwei Hu, Jie Meng, Saddek Bensalem, Xiaowei Huang
Safeguarding Large Language Models: A Survey. CoRR (2024)
Kai Jia, Zhe Gao, Ruicheng Ma, Haoyu Chai, Siqi Sun
An Adaptive Optimization Algorithm in LSTM for SOC Estimation Based on Improved Borges Derivative. IEEE Trans. Ind. Informatics 20 (2) (2024)
Hongtai Jing, Zhengtao Gao, Sheng Xu, Tao Shen, Zhangzhi Peng, Shwai He, Tao You, Shuang Ye, Wei Lin, Siqi Sun
Accurate prediction of antibody function and structure using bio-inspired antibody language model. Briefings Bioinform. 25 (4) (2024)
Liya Ma, Chen Li, Siqi Sun, Shu Guo, Lihong Wang, Jianxin Li
Privacy-preserving graph publishing with disentangled variational information bottleneck. Concurr. Comput. Pract. Exp. 36 (10) (2024)
Cheng Huang, Nannan Wang, Ziyan Wang, Siqi Sun, Lingzi Li, Junren Chen, Qianchong Zhao, Jiaxuan Han, Zhen Yang, Lei Shi
DONAPI: Malicious NPM Packages Detector using Behavior Sequence Knowledge Mapping. CoRR (2024)
Zhi Jin, Sheng Xu, Xiang Zhang, Tianze Ling, Nanqing Dong, Wanli Ouyang, Zhiqiang Gao, Cheng Chang, Siqi Sun
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. AAAI (2024)
Yuchen Ren, Zhiyuan Chen, Lifeng Qiao, Hongtai Jing, Yuchen Cai, Sheng Xu, Peng Ye, Xinzhu Ma, Siqi Sun, Hongliang Yan, Dong Yuan, Wanli Ouyang, Xihui Liu
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models. CoRR (2024)
Linglin Jing, Sheng Xu, Yifan Wang, Yuzhe Zhou, Tao Shen, Zhigang Ji, Hui Fang, Zhen Li, Siqi Sun
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues. AAAI (2024)
Xiutian Li, Siqi Sun, Rui Feng
Causal Representation Learning via Counterfactual Intervention. AAAI (2024)
Cheng Huang, Nannan Wang, Ziyan Wang, Siqi Sun, Lingzi Li, Junren Chen, Qianchong Zhao, Jiaxuan Han, Zhen Yang, Lei Shi
DONAPI: Malicious NPM Packages Detector using Behavior Sequence Knowledge Mapping. USENIX Security Symposium (2024)
Siqi Sun, Wenjie Ruan
TextVerifier: Robustness Verification for Textual Classifiers with Certifiable Guarantees. ACL (Findings) (2023)
Jiaqi Miao, Siqi Sun
Design, Actuation, and Functionalization of Untethered Soft Magnetic Robots with Life-Like Motions: A Review. CoRR (2023)
Zhongju Yuan, Tao Shen, Sheng Xu, Leiye Yu, Ruobing Ren, Siqi Sun
AF2-Mutation: Adversarial Sequence Mutations against AlphaFold2 on Protein Tertiary Structure Prediction. CoRR (2023)
Siqi Sun, Korin Richmond, Hao Tang
Improving Seq2Seq TTS Frontends With Transcribed Speech Audio. IEEE ACM Trans. Audio Speech Lang. Process. 31 (2023)
Siqi Sun, Yongyu Wang
A novel deep learning automatic modulation classifier with fusion of multichannel information using GRU. EURASIP J. Wirel. Commun. Netw. 2023 (1) (2023)
Jiaxuan Han, Cheng Huang, Siqi Sun, Zhonglin Liu, Jiayong Liu
bjXnet: an improved bug localization model based on code property graph and attention mechanism. Autom. Softw. Eng. 30 (1) (2023)
Zhi Jin, Sheng Xu, Xiang Zhang, Tianze Ling, Nanqing Dong, Wanli Ouyang, Zhiqiang Gao, Cheng Chang, Siqi Sun
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. CoRR (2023)
Le Zhang, Jiayang Chen, Tao Shen, Yu Li, Siqi Sun
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment Generation. CoRR (2023)
Tianyu Wu, Shizhu He, Jingping Liu, Siqi Sun, Kang Liu, Qing-Long Han, Yang Tang
A Brief Overview of ChatGPT: The History, Status Quo and Potential Future Development. IEEE CAA J. Autom. Sinica 10 (5) (2023)
Siqi Sun, Cheng Huang, Tiejun Wu, Yi Shen
SecTKG: A Knowledge Graph for Open-Source Security Tools. Int. J. Intell. Syst. 2023 (2023)
Siqi Sun, Wei Ji, Liangfeng Tang, Xiaobo Zhang, Yuejie Zhang, Rui Feng
An Interpretable Causal Approach for Bronchopulmonary Dysplasia Prediction. BIBM (2022)
Tao Shen, Zhihang Hu, Zhangzhi Peng, Jiayang Chen, Peng Xiong, Liang Hong, Liangzhen Zheng, Yixuan Wang, Irwin King, Sheng Wang, Siqi Sun, Yu Li
E2Efold-3D: End-to-End Deep Learning Method for accurate de novo RNA 3D Structure Prediction. CoRR (2022)
Yizhe Zhang, Siqi Sun, Xiang Gao, Yuwei Fang, Chris Brockett, Michel Galley, Jianfeng Gao, Bill Dolan
RetGen: A Joint Framework for Retrieval and Grounded Text Generation Modeling. AAAI (2022)
Yichong Xu, Chenguang Zhu, Shuohang Wang, Siqi Sun, Hao Cheng, Xiaodong Liu, Jianfeng Gao, Pengcheng He, Michael Zeng, Xuedong Huang
Human Parity on CommonsenseQA: Augmenting Self-Attention with External Attention. IJCAI (2022)
Yuwei Fang, Shuohang Wang, Yichong Xu, Ruochen Xu, Siqi Sun, Chenguang Zhu, Michael Zeng
Leveraging Knowledge in Multilingual Commonsense Reasoning. ACL (Findings) (2022)
Shuohang Wang, Yichong Xu, Yuwei Fang, Yang Liu, Siqi Sun, Ruochen Xu, Chenguang Zhu, Michael Zeng
Training Data is More Valuable than You Think: A Simple and Effective Method by Retrieving from Training Data. CoRR (2022)
Shuohang Wang, Yichong Xu, Yuwei Fang, Yang Liu, Siqi Sun, Ruochen Xu, Chenguang Zhu, Michael Zeng
Training Data is More Valuable than You Think: A Simple and Effective Method by Retrieving from Training Data. ACL (1) (2022)
Siqi Sun, Yongqing Sun, Mitsuhiro Goto, Shigekuni Kondo, Dan Mikami, Susumu Yamamoto
Motor Learning based on Presentation of a Tentative Goal. ICMR (2022)
Wei Ji, Weiwei Tian, Wenbin Pan, Siqi Sun, Hui Jiang, Rui Feng, Yuejie Zhang, Rui-Wei Zhao, Gang Jin
CellDet: Dual-Task Cell Detection Network for IHC-Stained Image Analysis. BIBM (2021)
Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu
FILTER: An Enhanced Fusion Method for Cross-lingual Language Understanding. AAAI (2021)
Yuwei Fang, Shuohang Wang, Yichong Xu, Ruochen Xu, Siqi Sun, Chenguang Zhu, Michael Zeng
Leveraging Knowledge in Multilingual Commonsense Reasoning. CoRR (2021)
Siqi Sun, Yen-Chun Chen, Linjie Li, Shuohang Wang, Yuwei Fang, Jingjing Liu
LightningDOT: Pre-training Visual-Semantic Embeddings for Real-Time Image-Text Retrieval. NAACL-HLT (2021)
Siqi Sun, Yining Qian, Ruoshi Zhang, Yanqi Wang, Xinran Li
An Improved Chinese String Comparator for Bloom Filter Based Privacy-Preserving Record Linkage. Entropy 23 (8) (2021)
Yizhe Zhang, Siqi Sun, Xiang Gao, Yuwei Fang, Chris Brockett, Michel Galley, Jianfeng Gao, Bill Dolan
Joint Retrieval and Generation Training for Grounded Text Generation. CoRR (2021)
Siqi Sun, Yen-Chun Chen, Linjie Li, Shuohang Wang, Yuwei Fang, Jingjing Liu
LightningDOT: Pre-training Visual-Semantic Embeddings for Real-Time Image-Text Retrieval. CoRR (2021)
Shuohang Wang, Luowei Zhou, Zhe Gan, Yen-Chun Chen, Yuwei Fang, Siqi Sun, Yu Cheng, Jingjing Liu
Cluster-Former: Clustering-based Sparse Transformer for Question Answering. ACL/IJCNLP (Findings) (2021)
Yichong Xu, Chenguang Zhu, Shuohang Wang, Siqi Sun, Hao Cheng, Xiaodong Liu, Jianfeng Gao, Pengcheng He, Michael Zeng, Xuedong Huang
Human Parity on CommonsenseQA: Augmenting Self-Attention with External Attention. CoRR (2021)
Siqi Sun
Unsupervised and Supervised Structure Learning for Protein Contact Prediction. CoRR (2020)
Xiao Chen, Xin Li, Peng Chen, Yang Liu, Siqi Sun, Jun Liu
Research on Android Application Detection based on static permission and Random Forest. CRC (2020)
Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu
FILTER: An Enhanced Fusion Method for Cross-lingual Language Understanding. CoRR (2020)
Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan
DIALOGPT : Large-Scale Generative Pre-training for Conversational Response Generation. ACL (demo) (2020)
Jun Liu, Siqi Sun, Yang Liu, Jiayang Guo, Hailong Li, Yuan Gao, Jintao Sun, Jing Xiang
A Novel MEGNet for Classification of High-Frequency Oscillations in Magnetoencephalography of Epileptic Patients. Complex. 2020 (2020)
Shuohang Wang, Yuwei Fang, Siqi Sun, Zhe Gan, Yu Cheng, Jing Jiang, Jingjing Liu
Cross-Thought for Sentence Encoder Pre-training. CoRR (2020)
Qing Hou, Yang Liu, Jun Liu, Siqi Sun
Epilepsy Detection Using Random Forest Classification Based on Locally Linear Embedding Algorithm. CRC (2020)
Shuohang Wang, Yuwei Fang, Siqi Sun, Zhe Gan, Yu Cheng, Jingjing Liu, Jing Jiang
Cross-Thought for Sentence Encoder Pre-training. EMNLP (1) (2020)
Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu
Accelerating Real-Time Question Answering via Question Generation. CoRR (2020)
Yuwei Fang, Siqi Sun, Zhe Gan, Rohit Pillai, Shuohang Wang, Jingjing Liu
Hierarchical Graph Network for Multi-hop Question Answering. EMNLP (1) (2020)
Shuohang Wang, Luowei Zhou, Zhe Gan, Yen-Chun Chen, Yuwei Fang, Siqi Sun, Yu Cheng, Jingjing Liu
Cluster-Former: Clustering-based Sparse Transformer for Long-Range Dependency Encoding. CoRR (2020)
Chen Zhu, Yu Cheng, Zhe Gan, Siqi Sun, Tom Goldstein, Jingjing Liu
FreeLB: Enhanced Adversarial Training for Natural Language Understanding. ICLR (2020)
Siqi Sun, Zhe Gan, Yuwei Fang, Yu Cheng, Shuohang Wang, Jingjing Liu
Contrastive Distillation on Intermediate Representations for Language Model Compression. EMNLP (1) (2020)
Siqi Sun, Zhe Gan, Yu Cheng, Yuwei Fang, Shuohang Wang, Jingjing Liu
Contrastive Distillation on Intermediate Representations for Language Model Compression. CoRR (2020)
Yuwei Fang, Siqi Sun, Zhe Gan, Rohit Pillai, Shuohang Wang, Jingjing Liu
Hierarchical Graph Network for Multi-hop Question Answering. CoRR (2019)
Kosuke Takahashi, Dan Mikami, Mariko Isogawa, Siqi Sun, Yoshinori Kusachi
Easy Extrinsic Calibration of VR System and Multi-camera Based Marker-Less Motion Capture System. ISMAR Adjunct (2019)
Chen Zhu, Yu Cheng, Zhe Gan, Siqi Sun, Tom Goldstein, Jingjing Liu
FreeLB: Enhanced Adversarial Training for Language Understanding. CoRR (2019)
Siqi Sun, Yu Cheng, Zhe Gan, Jingjing Liu
Patient Knowledge Distillation for BERT Model Compression. EMNLP/IJCNLP (1) (2019)
Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan
DialoGPT: Large-Scale Generative Pre-training for Conversational Response Generation. CoRR (2019)
Siqi Sun, Yu Cheng, Zhe Gan, Jingjing Liu
Patient Knowledge Distillation for BERT Model Compression. CoRR (2019)
Ran Liu, Mengxi Xie, Siqi Sun
Reconstructing positive surveys from negative surveys by improved artificial immune network. SSCI (2018)
Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput. Biol. 13 (1) (2017)
Yuancheng Zhu, Zhe Liu, Siqi Sun
Learning Nonparametric Forest Graphical Models with Prior Information. AISTATS (2017)
Takenori Obo, Chiaki Kasuya, Siqi Sun, Naoyuki Kubota
Human-robot interaction based on cognitive bias to increase motivation for daily exercise. SMC (2017)
Branislav Kveton, Hung Hai Bui, Mohammad Ghavamzadeh, Georgios Theocharous, S. Muthukrishnan, Siqi Sun
Graphical Model Sketch. CoRR (2016)
Takenori Obo, Siqi Sun, Naoyuki Kubota
Smart Device Interlocked Robot Partner for Elderly Care. ICIRA (2) (2016)
Branislav Kveton, Hung Hai Bui, Mohammad Ghavamzadeh, Georgios Theocharous, S. Muthukrishnan, Siqi Sun
Graphical Model Sketch. ECML/PKDD (1) (2016)
Siqi Sun, Takahiro Takeda, Hisae Koyama, Naoyuki Kubota
Smart Device Interlocked Robot Partners for Information Support Systems in Sightseeing Guide. SCIS&ISIS (2016)
Kaixin Sui, Siqi Sun, Yousef Azzabi, Xiaoping Zhang, Youjian Zhao, Jilong Wang, Zimu Li, Dan Pei
Understanding the Impact of AP Density on WiFi Performance Through Real-World Deployment. LANMAN (2016)
Sheng Wang, Siqi Sun, Jinbo Xu
AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling. ECML/PKDD (2) (2016)
Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. CoRR (2016)
Siqi Sun, Takenori Obo, Chu Kiong Loo, Naoyuki Kubota
Health Promotion Using Smart Device Interlocked Robot Partners for Elderly People. SCIS&ISIS (2016)
Yuancheng Zhu, Zhe Liu, Siqi Sun
Nonparametric Estimation of Scale-Free Graphical Models. CoRR (2015)
Qingming Tang, Siqi Sun, Chao Yang, Jinbo Xu
Learning Scale Free Network by Node Specific Degree Prior. CoRR (2015)
Sheng Wang, Siqi Sun, Jinbo Xu
AUC-maximized Deep Convolutional Neural Fields for Sequence Labeling. CoRR (2015)
Qingming Tang, Siqi Sun, Jinbo Xu
Learning Scale-Free Networks by Dynamic Node Specific Degree Prior. ICML (2015)
Siqi Sun, Mladen Kolar, Jinbo Xu
Learning structured densities via infinite dimensional exponential families. NIPS (2015)
Siqi Sun, Hai Wang, Jinbo Xu
Inferring Block Structure of Graphical Models in Exponential Families. AISTATS (2015)
Siqi Sun, Jianzhu Ma, Sheng Wang, Jinbo Xu
Predicting diverse M-best protein contact maps. BIBM (2015)
Chengqi Yi, Yuanyuan Bao, Siqi Sun, Yibo Xue
A novel method for information propagation model perceiving. ICNC (2014)
Siqi Sun, Yuancheng Zhu, Jinbo Xu
Adaptive Variable Clustering in Gaussian Graphical Models. AISTATS (2014)
Siqi Sun, Shan Wang, Wenfeng Shen, Weimin Xu, Yanheng Zheng
A Study of the Memory Wall within the Jacobi Iteration Method. HPCC-ICESS (2012)