Philip V. Ogren

Publication Activity (10 Years)

Years Active: 1999-2014
Publications (10 Years): 0

Top Topics

Ontology Driven

Machine Learning

Database Driven

Top Venues

Publications

Steven Bethard, Philip V. Ogren, Lee Becker
ClearTK 2.0: Design Patterns for Machine Learning in UIMA. LREC (2014)
K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter
High-Precision Biological Event Extraction: Effects of System and of Data. Comput. Intell. 27 (4) (2011)
Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. 17 (5) (2010)
Rodney D. Nielsen, James J. Masanz, Philip V. Ogren, Wayne H. Ward, James H. Martin, Guergana K. Savova, Martha Palmer
An architecture for complex clinical question answering. IHI (2010)
Philip V. Ogren
Improving Syntactic Coordination Resolution using Language Modeling. NAACL (Student Research Workshop) (2010)
K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter
High-precision biological event extraction with a concept recognizer. BioNLP@HLT-NAACL (Shared Task) (2009)
Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute
Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics 41 (6) (2008)
Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinform. 9 (2008)
Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute
Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. 15 (1) (2008)
Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova
System Evaluation on a Named Entity Corpus from Clinical Notes. LREC (2008)
Philip V. Ogren, Guergana K. Savova, Christopher G. Chute
Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC (2008)
Philip V. Ogren
Knowtator: A Protégé plug-in for annotated corpus construction. HLT-NAACL (2006)
Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute
Building and Evaluating Annotated Corpora for Medical NLP Systems. AMIA (2006)
K. Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox, Lawrence Hunter
Empirical data on corpus design and usage in biomedical natural language processing. AMIA (2005)
Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter
BioCreAtIvE Task1A: entity identification with a stochastic tagger. BMC Bioinform. 6 (S-1) (2005)
K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter
Corpus Design for Biomedical Natural Language Processing. LBLODMBS@IDMB (2005)
Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter
Implications of Compositionality in the Gene Ontology for Its Curation and Usage . Pacific Symposium on Biocomputing (2005)
Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter
The Compositional Structure of Gene Ontology Terms. Pacific Symposium on Biocomputing (2004)
Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute
A formal approach to integrating synonyms with a reference terminology. AMIA (2000)
Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute
A randomized controlled trial of concept based indexing of Web page content. AMIA (2000)
Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute
A randomized double-blind controlled trial of automated term dissection. AMIA (1999)
Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin
A large-scale evaluation of terminology integration characteristics. AMIA (1999)
Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute
Barriers to the clinical implementation of compositionality. AMIA (1999)