OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
Lawrence HunterZhiyong LuJames FirbyWilliam A. Baumgartner Jr.Helen L. JohnsonPhilip V. OgrenK. Bretonnel CohenPublished in: BMC Bioinform. (2008)
Keyphrases
- gene expression
- protein interaction
- biological processes
- ontology driven
- microarray
- molecular mechanisms
- microarray data
- protein protein interactions
- high throughput experimental
- computational methods
- gene expression data
- dna binding
- protein function
- binding sites
- biological systems
- biological knowledge
- regulatory networks
- biological networks
- statistical analysis
- knowledge representation
- protein interaction networks
- gene regulation
- gene ontology
- gene expression profiles
- domain knowledge
- protein complexes
- protein protein interaction networks
- data analysis
- systems biology
- protein structure
- protein interaction data
- high throughput