Hasindu Gamaarachchi

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 15

Top Topics

Gel Electrophoresis

Plagiarism Detection

Gpu Accelerated

Top Venues

Publications

Kisaru Liyanage, Hasindu Gamaarachchi, Hassaan Saadat, Tuo Li, Hiruna Samarakoon, Sri Parameswaran
Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions. DATE (2024)
Jing Gong, Hassaan Saadat, Haris Javaid, Hasindu Gamaarachchi, David Taubman, Sri Parameswaran
SEA: Sign-Separated Accumulation Scheme for Resource-Efficient DNN Accelerators. DATE (2024)
Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath, Roshan G. Ragel
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing. BMC Bioinform. 24 (1) (2023)
Kisaru Liyanage, Hasindu Gamaarachchi, Roshan G. Ragel, Sri Parameswaran
Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 42 (9) (2023)
Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 42 (11) (2023)
Hasindu Gamaarachchi, Kisaru Liyanage, Sri Parameswaran
Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis. DAC (2023)
James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. Bioinform. 38 (5) (2022)
Po Jui Shih, Hassaan Saadat, Sri Parameswaran, Hasindu Gamaarachchi
Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices. CoRR (2022)
Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference. CoRR (2022)
Hasindu Gamaarachchi
Computer Architecture-Aware Optimisation of DNA Analysis Systems. CoRR (2021)
Hasindu Gamaarachchi, Arash Bayat, Bruno Gaëta, Sri Parameswaran
Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. BMC Bioinform. 21 (1) (2020)
Ann Franchesca Laguna, Hasindu Gamaarachchi, Xunzhao Yin, Michael T. Niemier, Sri Parameswaran, Xiaobo Sharon Hu
Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping. ICCAD (2020)
Ram Prasad Mohanty, Hasindu Gamaarachchi, Andrew J. Lambert, Sri Parameswaran
SWARAM: Portable Energy and Cost Efficient Embedded System for Genomic Processing. ACM Trans. Embed. Comput. Syst. 18 (5s) (2019)
Hasindu Gamaarachchi, Harsha Ganegoda
Power Analysis Based Side Channel Attack. CoRR (2018)
M. A. C. Jiffriya, M. A. C. Akmal Jahan, Hasindu Gamaarachchi, Roshan G. Ragel
Accelerating text-based plagiarism detection using GPUs. ICIIS (2015)
Hasindu Gamaarachchi, Harsha Ganegoda, Roshan G. Ragel
The A to Z of building a testbed for Power Analysis attacks. ICIIS (2015)
Suneth Namal, Hasindu Gamaarachchi, Gyu Myoung Lee, Tai-Won Um
Autonomic trust management in cloud-based and highly dynamic IoT applications. Kaleidoscope (2015)
Hasindu Gamaarachchi, Roshan G. Ragel, Darshana Jayasinghe
Accelerating Correlation Power Analysis Using Graphics Processing Units. CoRR (2014)