Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling.
Hasindu GamaarachchiArash BayatBruno GaëtaSri ParameswaranPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2020)
Keyphrases
- prefetching
- graph structure
- data access
- genetic algorithm
- query processing
- graph model
- caching scheme
- semi supervised
- assembly systems
- resource consumption
- databases
- visually guided
- cache management
- optimisation algorithm
- hit rate
- multiple queries
- assembly line
- memory hierarchy
- process planning
- back end
- evolutionary algorithm
- semantic caching
- embedded processors
- data sets