Jared T. Simpson

Publication Activity (10 Years)

Years Active: 2010-2020
Publications (10 Years): 4

Top Topics

Data Representations

Graph Structures

Gpu Accelerated

Signal Analysis

Top Venues

J. Comput. Biol.

Publications

Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. BMC Bioinform. 21 (1) (2020)
Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson
Nanocall: an open source basecaller for Oxford Nanopore sequencing data. Bioinform. 33 (1) (2017)
Camilla L. C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis, Reference Consortium
MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000Research 4 (2015)
Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev
On the Representation of De Bruijn Graphs. J. Comput. Biol. 22 (5) (2015)
Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev
On the representation of de Bruijn graphs. CoRR (2014)
Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev
On the Representation of de Bruijn Graphs. RECOMB (2014)
Jared T. Simpson
Exploring genome characteristics and sequence quality without a reference. Bioinform. 30 (9) (2014)
Jared T. Simpson, Richard Durbin
Efficient construction of an assembly string graph using the FM-index. Bioinform. 26 (12) (2010)
Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin
Copy number variant detection in inbred strains from short read sequence data. Bioinform. 26 (4) (2010)