Noah M. Daniels

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 17

Top Topics

Remote Homology Detection

Computational Biology

Lossy Compression

Top Venues

Publications

Morgan E. Prior, Thomas J. Howard III, Oliver McLaughlin, Najib Ishaq, Noah M. Daniels
CLAM-Accelerated K-Nearest Neighbors Entropy-Scaling Search of Large High-Dimensional Datasets via an Actualization of the Manifold Hypothesis. CoRR (2023)
Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz
Determining population structure from k-mer frequencies. BCB (2022)
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore J. Cowen, Alva L. Couch, Noah M. Daniels
MEDFORD: A human and machine readable metadata markup language. CoRR (2022)
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
MEDFORD: A human- and machine-readable metadata markup language. Database J. Biol. Databases Curation 2022 (2022) (2022)
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
MEtaData Format for Open Reef Data (MEDFORD). MTSR (2021)
Najib Ishaq, Thomas J. Howard III, Noah M. Daniels
Clustered Hierarchical Anomaly and Outlier Detection Algorithms. CoRR (2021)
Najib Ishaq, Thomas J. Howard III, Noah M. Daniels
Clustered Hierarchical Anomaly and Outlier Detection Algorithms. IEEE BigData (2021)
Najib Ishaq, George Student, Noah M. Daniels
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data. IEEE BigData (2019)
Najib Ishaq, George Student, Noah M. Daniels
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data. IEEE BigData (2019)
Najib Ishaq, George Student, Noah M. Daniels
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data. CoRR (2019)
Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz
Efficient Distance Calculations Between Genomes Using Mathematical Approximation. BCB (2018)
Olivia M. Ahern, Rebecca J. Stevick, Li Yuan, Noah M. Daniels
Analysis of 16S Genomic Data using Graphical Databases. BCB (2017)
Timothy Leonard, Lutz Hamel, Noah M. Daniels, Natallia V. Katenka
Assortative Mixture of English Parts of Speech. COMPLEX NETWORKS (2017)
Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values. DCC (2016)
Bonnie Berger, Noah M. Daniels
Computational biology in the 21st century: scaling with compressive algorithms. Commun. ACM 59 (8) (2016)
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (1) (2015)
Yun William Yu, Noah M. Daniels, David Christian Danko, Bonnie Berger
Entropy-scaling search of massive biological data. CoRR (2015)
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search. BCB (2013)
Noah M. Daniels
Remote Homology Detection in Proteins Using Graphical Models CoRR (2013)
Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger
Compressive genomics for protein databases. Bioinform. 29 (13) (2013)
Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone. Bioinform. 28 (9) (2012)
Noah M. Daniels, Shilpa Nadimpalli, Lenore J. Cowen
Formatt: Correcting Protein Multiple Structural Alignments by Incorporating Sequence Alignment. BMC Bioinform. 13 (2012)
Noah M. Daniels, Andrew Gallant, Norman Ramsey
Experience report: Haskell in computational biology. ICFP (2012)
Shilpa Nadimpalli, Noah M. Daniels, Lenore Cowen
Formatt: correcting protein multiple structural alignments by sequence peeking. BCB (2011)
Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke
Touring Protein Space with Matt. ISBRA (2010)