Yun William Yu

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 25

Top Topics

Levenshtein Distance

Protein Structure

Data Repositories

Language Generation

Top Venues

J. Comput. Biol.

Publications

Andrew Zheng, Jim Shaw, Yun William Yu
Mora: abundance aware metagenomic read re-assignment for disentangling similar strains. BMC Bioinform. 25 (1) (2024)
Alexander T. Leighton, Yun William Yu
Secure Federated Boolean Count Queries Using Fully-Homomorphic Cryptography. RECOMB (2024)
Yun William Yu
On Minimizers and Convolutional Filters: Theoretical Connections and Applications to Genome Analysis. J. Comput. Biol. 31 (5) (2024)
Daphne Ippolito, Nicholas Carlini, Katherine Lee, Milad Nasr, Yun William Yu
Reverse-Engineering Decoding Strategies Given Blackbox Access to a Language Generation System. CoRR (2023)
Yun William Yu, Griffin M. Weber
HyperMinHash: MinHash in LogLog Space (Extended Abstract). ICDE (2023)
Luke Staniscia, Yun William Yu
Image-centric compression of protein structures improves space savings. BMC Bioinform. 24 (1) (2023)
Daphne Ippolito, Nicholas Carlini, Katherine Lee, Milad Nasr, Yun William Yu
Reverse-Engineering Decoding Strategies Given Blackbox Access to a Language Generation System. INLG (2023)
James Koppel, Yun William Yu
Skiing Is Easy, Gymnastics Is Hard: Complexity of Routine Construction in Olympic Sports. FUN (2022)
Jim Shaw, Yun William Yu
Theory of local k-mer selection with applications to long-read alignment. Bioinform. 38 (20) (2022)
Jim Shaw, Yun William Yu
flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning. J. Comput. Biol. 29 (2) (2022)
Yun William Yu, Griffin M. Weber
HyperMinHash: MinHash in LogLog Space. IEEE Trans. Knowl. Data Eng. 34 (1) (2022)
Yun William Yu
On minimizers and convolutional filters: a partial justification for the unreasonable effectiveness of CNNs in categorical sequence analysis. CoRR (2021)
Yoshua Bengio, Daphne Ippolito, Richard Janda, Max Jarvie, Benjamin Prud'homme, Jean-Franois Rousseau, Abhinav Sharma, Yun William Yu
Inherent privacy limitations of decentralized contact tracing apps. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Bonnie Berger, Michael S. Waterman, Yun William Yu
Levenshtein Distance, Sequence Comparison and Biological Database Search. IEEE Trans. Inf. Theory 67 (6) (2021)
Ziye Tao, Griffin M. Weber, Yun William Yu
Expected 10-anonymity of HyperLogLog sketches for federated queries of clinical data repositories. Bioinform. 37 (Supplement) (2021)
Abbas Hammoud, Yun William Yu
Privacy-accuracy trade-offs in noisy digital exposure notifications. CoRR (2020)
Yun William Yu, Jean-Charles Delvenne, Sophia N. Yaliraki, Mauricio Barahona
Severability of mesoscale components and local time scales in dynamical networks. CoRR (2020)
Hyunghoon Cho, Daphne Ippolito, Yun William Yu
Contact Tracing Mobile Apps for COVID-19: Privacy Considerations and Related Trade-offs. CoRR (2020)
Hannah Alsdurf, Yoshua Bengio, Tristan Deleu, Prateek Gupta, Daphne Ippolito, Richard Janda, Max Jarvie, Tyler Kolody, Sekoul Krastev, Tegan Maharaj, Robert Obryk, Dan Pilat, Valerie Pisano, Benjamin Prud'homme, Meng Qu, Nasim Rahaman, Irina Rish, Jean-Franois Rousseau, Abhinav Sharma, Brooke Struck, Jian Tang, Martin Weiss, Yun William Yu
COVI White Paper. CoRR (2020)
Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng
Metagenomic binning through low-density hashing. Bioinform. 35 (2) (2019)
Yaron Orenstein, Yun William Yu, Bonnie Berger
-Mers Using Joker Characters. J. Comput. Biol. 25 (11) (2018)
Yun William Yu, Griffin M. Weber
HyperMinHash: Jaccard index sketching in LogLog space. CoRR (2017)
Erik D. Demaine, Martin L. Demaine, Sarah Eisenstat, Adam Hesterberg, Andrea Lincoln, Jayson Lynch, Yun William Yu
Total Tetris: Tetris with Monominoes, Dominoes, Trominoes, Pentominoes, ... J. Inf. Process. 25 (2017)
Yun William Yu
Approximation hardness of Shortest Common Superstring variants. CoRR (2016)
Ariya Shajii, Deniz Yörükoglu, Yun William Yu, Bonnie Berger
-mer matching. Bioinform. 32 (17) (2016)
Yun William Yu, Noah M. Daniels, David Christian Danko, Bonnie Berger
Entropy-scaling search of massive biological data. CoRR (2015)
Yun William Yu, Deniz Yörükoglu, Bonnie Berger
Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification. RECOMB (2014)