Mikel Hernaez

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 20

Top Topics

Lossy Compression

Top Venues

J. Bioinform. Comput. Biol.

EURASIP J. Wirel. Commun. Netw.

Publications

Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez
Towards a more inductive world for drug repurposing approaches. CoRR (2023)
Mikel Hernaez
Towards scalable genomic data access. Nat. Comput. Sci. 1 (6) (2021)
Jan Voges, Mikel Hernaez, Marco Mattavelli, Jörn Ostermann
An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data. Proc. IEEE 109 (9) (2021)
Mikel Hernaez, Charles Blatti, Olivier Gevaert
Comparison of single and module-based methods for modeling gene regulatory networks. Bioinform. 36 (2) (2020)
Jan Voges, Tom Paridaens, Fabian Müntefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier, Jörn Ostermann, Mikel Hernaez
GABAC: an arithmetic coding solution for genomic data. Bioinform. 36 (7) (2020)
Qingxi Meng, Idoia Ochoa, Mikel Hernaez
GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form. Bioinform. 36 (18) (2020)
Albert No, Mikel Hernaez, Idoia Ochoa
CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores. J. Bioinform. Comput. Biol. 18 (6) (2020)
Idoia Ochoa, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez
AliCo: A New Efficient Representation for SAM Files. DCC (2019)
Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
SPRING: a next-generation compressor for FASTQ data. Bioinform. 35 (15) (2019)
Jan Voges, Jörn Ostermann, Mikel Hernaez
CALQ: compression of quality values of aligned sequencing data. Bioinform. 34 (10) (2018)
Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman
QVZ: lossy compression of quality values. Bioinform. 34 (1) (2018)
Lukasz Roguski, Idoia Ochoa, Mikel Hernaez, Sebastian Deorowicz
FaStore: a space-saving solution for raw sequencing data. Bioinform. 34 (16) (2018)
Reggy Long, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
GeneComp, a New Reference-Based Compressor for SAM Files. DCC (2017)
Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley
Effect of lossy compression of quality scores on variant calling. Briefings Bioinform. 18 (2) (2017)
Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
A Cluster-Based Approach to Compression of Quality Scores. DCC (2016)
Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley
Denoising of Quality Scores for Boosted Inference and Reduced Storage. DCC (2016)
Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values. DCC (2016)
Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
GTRAC: fast retrieval from compressed collections of genomic variants. Bioinform. 32 (17) (2016)
Idoia Ochoa, Albert No, Mikel Hernaez, Tsachy Weissman
CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores. ITW (2016)
Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
Comment on: 'ERGC: an efficient referential genome compression algorithm'. Bioinform. 32 (7) (2016)
Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman
QVZ: lossy compression of quality values. Bioinform. 31 (19) (2015)
Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
iDoComp: a compression scheme for assembled genomes. Bioinform. 31 (5) (2015)
Iker Alustiza, Mikel Hernaez, Pedro M. Crespo
Design of a new scheme for multi-hop wireless networks using decode-and-forward strategy. EURASIP J. Wirel. Commun. Netw. 2015 (2015)
Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
Aligned genomic data compression via improved modeling. J. Bioinform. Comput. Biol. 12 (6) (2014)
Iker Alustiza, Mikel Hernaez, Xabier Insausti, Pedro M. Crespo
Teaching information theory via a simulation tool for communications systems. EDUCON (2013)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel. IEEE J. Sel. Areas Commun. 31 (8) (2013)
Gerard Vidal, Mikel Hernaez
Communication Services Empowered with a Classical Chaos Based Cryptosystem. Financial Cryptography (2013)
Mikel Hernaez, Iker Alustiza, Pedro M. Crespo, Javier Del Ser
A Decode-and-Forward Scheme for Multihop Wireless Networks. VTC Fall (2013)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
A Flexible Channel Coding Approach for Short-Length Codewords CoRR (2012)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel CoRR (2012)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
Flexible Channel Coding Approach for Short-Length Codewords. IEEE Commun. Lett. 16 (9) (2012)
Mikel Hernaez, Pedro M. Crespo
A Novel Scheme for Message-Forwarding in Multi-Hop Ad-Hoc Wireless Networks. VTC Spring (2011)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
Joint Non-Binary LDPC-BICM and Network Coding with Iterative Decoding for the Multiple Access Relay Channel. VTC Spring (2011)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías
Erratum to "serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels". IEEE Commun. Lett. 14 (3) (2010)
Idoia Ochoa, Pedro M. Crespo, Mikel Hernaez
LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation. IEEE Commun. Lett. 14 (9) (2010)
Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime. IEEE Commun. Lett. 14 (4) (2010)
Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez
Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime. MOBILIGHT (2010)
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías
Serially-concatenated LDGM codes for correlated sources over gaussian broadcast channels. IEEE Commun. Lett. 13 (10) (2009)