MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
Noah M. DanielsAndrew GallantNorman RamseyLenore J. CowenPublished in: BCB (2013)
Keyphrases
- stochastic search
- protein sequences
- remote homology detection
- protein classification
- variable selection
- simulated annealing
- psi blast
- protein structure
- amino acids
- search methods
- protein function
- consistency checking
- tree search
- sequence analysis
- string kernels
- protein structure prediction
- training data
- rna sequences
- high dimensional
- secondary structure
- protein protein interactions
- training set