MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
Noah M. DanielsAndrew GallantNorman RamseyLenore J. CowenPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2015)
Keyphrases
- stochastic search
- protein sequences
- remote homology detection
- protein classification
- simulated annealing
- search methods
- variable selection
- protein structure
- protein function
- consistency checking
- amino acids
- computational biology
- psi blast
- amino acid sequences
- secondary structure
- string kernels
- protein structure prediction
- kernel methods
- machine learning
- tree search
- sequence analysis
- protein protein interactions
- unsupervised learning
- lower bound
- data analysis
- feature extraction
- feature selection