Mohammad Shahrokh Esfahani

Publication Activity (10 Years)

Years Active: 2011-2019
Publications (10 Years): 8

Top Topics

Biological Knowledge

Kalman Filtering

Gaussian Mixture

Bayesian Classification

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Pattern Recognit.

IEEE Trans. Signal Process.

Publications

Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (2) (2019)
Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
Optimal Bayesian Kalman Filtering With Prior Update. IEEE Trans. Signal Process. 66 (8) (2018)
Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani
Intrinsically Bayesian Robust Kalman Filter: An Innovation Process Approach. IEEE Trans. Signal Process. 65 (10) (2017)
Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors. BMC Bioinform. 18 (14) (2017)
Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
Bayesian Kalman filtering in the presence of unknown noise statistics using factor graphs. ACSSC (2017)
Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Edward R. Dougherty
Inference of Nonlinear ODE-Based Gene Regulatory Networks via Intrinsically Bayesian Robust Kalman Filtering. BCB (2016)
Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Edward R. Dougherty
A Bayesian framework for robust Kalman filtering under uncertain noise statistics. ACSSC (2016)
Mohammad Shahrokh Esfahani, Aaron M. Newman, Florian Scherer, Robert Tibshirani, Maximilian Diehn, Ash A. Alizadeh
Noninvasive Cancer Classification Using Diverse Genomic Features in Circulating Tumor DNA. BCB (2016)
Ariana Broumand, Mohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R. Dougherty
Discrete optimal Bayesian classification with error-conditioned sequential sampling. Pattern Recognit. 48 (11) (2015)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
Effect of separate sampling on classification accuracy. Bioinform. 30 (2) (2014)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
Incorporation of Biological PathwayKnowledge in the Construction of Priorsfor Optimal Bayesian Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Mohammad Shahrokh Esfahani, Jason M. Knight, Amin Zollanvari, Byung-Jun Yoon, Edward R. Dougherty
Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification. Pattern Recognit. 46 (10) (2013)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
Effect of separate sampling on classification and the minimax criterion. GENSiPS (2013)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
Sample-based prior probability construction using biological pathway knowledge. ACSSC (2013)
Mohammad Shahrokh Esfahani, Masoumeh Nasiri-Kenari
A Cooperative MARC Scheme Using Analogue Network Coding to Achieve Second-Order Diversity CoRR (2013)
Esmaeil Atashpaz-Gargari, Mohammad Shahrokh Esfahani, Richard Metz, Charles D. Johnson
OBGene: Optimal barcode generator for NGS experiments. GENSiPS (2012)
Mohammad Shahrokh Esfahani, Amin Zollanvari, Byung-Jun Yoon, Edward R. Dougherty
Designing enhanced classifiers using prior process knowledge: Regularized maximum-likelihood. GENSiPS (2011)
Mohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R. Dougherty
Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty. BMC Bioinform. 12 (S-10) (2011)