Charles D. Johnson

Publication Activity (10 Years)

Years Active: 2011-2018
Publications (10 Years): 2

Top Topics

Alternative Splicing

Quality Assessment

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson
Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson
Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. XSEDE (2016)
Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson
De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp. GlobalSIP (2014)
Noushin Ghaffari, Mohammadmahdi R. Yousefi, Charles D. Johnson, Ivan Ivanov, Edward R. Dougherty
Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification. BMC Bioinform. 14 (2013)
Esmaeil Atashpaz-Gargari, Mohammad Shahrokh Esfahani, Richard Metz, Charles D. Johnson
OBGene: Optimal barcode generator for NGS experiments. GENSiPS (2012)
Amir Nikooienejad, Richard Metz, Byung-Jun Yoon, Charles D. Johnson
Fast DNA barcode generating algorithm using Radix Coding method. GENSiPS (2012)
Ying Wang, Noushin Ghaffari, Charles D. Johnson, Ulisses M. Braga-Neto, Hui Wang, Rui Chen, Huaijun Zhou
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. BMC Bioinform. 12 (S-10) (2011)