Noushin Ghaffari

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 7

Top Topics

High Throughput

Gene Expression

Cost Minimization

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Comput. Biol. Chem.

Publications

Noushin Ghaffari, Lijie Zhou, Rabeya Nazara, Catherine M. Mageeney, Kelly P. Williams
Unsupervised Machine Learning Techniques to Categorize Genomic Islands. EIT (2024)
Noushin Ghaffari, Lijie Zhou, Catherine M. Mageeney, Kelly Porter Williams
Exploring Unsupervised Machine Learning Techniques for Genomic Island Categorization. PEARC (2023)
Noushin Ghaffari, Swaathi Suguna Venkatesh, Rabeya Nazara, Oluwaseyi Oladejo, Rakshith Puligundla Venugopal, Stephen J. Gaughran, Bridgett M. Vonholdt
Workflow for Understanding the Phenotypic Characteristics of Seals by Epigenetic Analysis. PEARC (2023)
Fatema Shormin, Noushin Ghaffari, Catherine M. Mageeney, Kelly Porter Williams
Comparative Computational Approach for Evaluating Transposon Detection in Genomic Data. PEARC (2023)
Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson
Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Chun-Chi Chen, Noushin Ghaffari, Xiaoning Qian, Byung-Jun Yoon
Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy. Comput. Biol. Chem. 69 (2017)
Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson
Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. XSEDE (2016)
Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson
De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp. GlobalSIP (2014)
Noushin Ghaffari, Mohammadmahdi R. Yousefi, Charles D. Johnson, Ivan Ivanov, Edward R. Dougherty
Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification. BMC Bioinform. 14 (2013)
Ying Wang, Noushin Ghaffari, Charles D. Johnson, Ulisses M. Braga-Neto, Hui Wang, Rui Chen, Huaijun Zhou
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. BMC Bioinform. 12 (S-10) (2011)
Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
A CoD-based stationary control policy for intervening in large gene regulatory networks. BMC Bioinform. 12 (S-10) (2011)
Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty
Selection policy-induced reduction mappings for Boolean networks. IEEE Trans. Signal Process. 58 (9) (2010)
Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
State reduction for network intervention in probabilistic Boolean networks. Bioinform. 26 (24) (2010)
Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinform. 26 (12) (2010)
Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
A CoD based reduction algorithm for Boolean and probabilistic Boolean networks. GENSiPS (2009)
Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari, Edward R. Dougherty
Intervention in gene regulatory networks via greedy control policies based on long-run behavior. BMC Syst. Biol. 3 (2009)
Cole Harris, Noushin Ghaffari
Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning. BIOCOMP (2007)
Hisham Al-Mubaid, Noushin Ghaffari
Identifying the most significant genes from gene expression profiles for sample classification. GrC (2006)
Noushin Ghaffari, Hisham Al-Mubaid
A New Gene Selection Technique Using Feature Selection Methodology. CATA (2006)