Md. Shamsuzzoha Bayzid

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 21

Top Topics

Gene Duplication

Protein Secondary Structure Prediction

Top Venues

J. Comput. Biol.

Publications

Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid
Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting. RECOMB-CG (2024)
Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman
CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Md Ashiqur Rahman, Abdullah Aman Tutul, Mahfuza Sharmin, Md. Shamsuzzoha Bayzid
BEENE: deep learning-based nonlinear embedding improves batch effect estimation. Bioinform. 39 (8) (2023)
Md. Shamsuzzoha Bayzid
Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees. J. Comput. Biol. 30 (2) (2023)
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman
Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference. IEEE Trans. Cybern. 52 (5) (2022)
Sazan Mahbub, Md. Shamsuzzoha Bayzid
EGRET: edge aggregated graph attention networks and transfer learning improve protein-protein interaction site prediction. Briefings Bioinform. 23 (2) (2022)
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid
Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data. J. Comput. Biol. 29 (11) (2022)
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman
PASTA with many application-aware optimization criteria for alignment based phylogeny inference. Comput. Biol. Chem. 98 (2022)
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid
QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data. RECOMB (2022)
Navid Bin Hasan, Avijit Biswas, Metin Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid
Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements. RECOMB-CG (2022)
Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks. CoRR (2021)
Mahim Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid
wQFM: highly accurate genome-scale species tree estimation from weighted quartets. Bioinform. 37 (21) (2021)
Nabil Ibtehaz, Ishtiaque Ahmed, Md Sabbir Ahmed, M. Sohel Rahman, Rajeev K. Azad, Md. Shamsuzzoha Bayzid
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm. Briefings Bioinform. 22 (6) (2021)
Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks. IROS (2021)
Zaineb Chelly Dagdia, Pavel Avdeyev, Md. Shamsuzzoha Bayzid
Biological computation and computational biology: survey, challenges, and discussion. Artif. Intell. Rev. 54 (6) (2021)
Nabil Ibtehaz, S. M. Shakhawat Hossain Sourav, Md. Shamsuzzoha Bayzid, M. Sohel Rahman
Align-gram : Rethinking the Skip-gram Model for Protein Sequence Analysis. CoRR (2020)
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Sakshar Chakravarty, Mohammad Saifur Rahman, M. Sohel Rahman
A Multi-objective Metaheuristic Approach for Accurate Species Tree Estimation. BIBE (2020)
Mostofa Rafid Uddin, Sazan Mahbub, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction. Bioinform. 36 (17) (2020)
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman
A 'phylogeny-aware' multi-objective optimization approach for computing MSA. GECCO (2019)
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
Gene tree parsimony for incomplete gene trees: addressing true biological loss. Algorithms Mol. Biol. 13 (1) (2018)
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
Gene Tree Parsimony for Incomplete Gene Trees. WABI (2017)
Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow
ASTRAL: genome-scale coalescent-based species tree estimation. Bioinform. 30 (17) (2014)
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
Naive binning improves phylogenomic analyses. Bioinform. 29 (18) (2013)
Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow
Inferring Optimal Species Trees Under Gene Duplication and Loss. Pacific Symposium on Biocomputing (2013)
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence. J. Comput. Biol. 19 (6) (2012)
Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman
Discovering Pairwise Compatibility Graphs. COCOON (2010)
Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman
Discovering Pairwise Compatibility Graphs. Discret. Math. Algorithms Appl. 2 (4) (2010)
Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Md. Maksudul Alam, Md. Saidur Rahman
A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction. BMEI (1) (2008)