Jose Manuel Herruzo

Publication Activity (10 Years)

Years Active: 2019-2021
Publications (10 Years): 4

Top Topics

Sequence Alignment

Index Structure

Design Space Exploration

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

IEEE Trans. Computers

J. Supercomput.

Publications

Jose Manuel Herruzo, Ivan Fernandez, Sonia González-Navarro, Oscar G. Plata
Enabling fast and energy-efficient FM-index exact matching using processing-near-memory. J. Supercomput. 77 (9) (2021)
Yasir Mahmood Qureshi, Jose Manuel Herruzo, Marina Zapater, Katzalin Olcoz, Sonia Gonzalez-Navarro, Oscar G. Plata, David Atienza
Genome Sequence Alignment - Design Space Exploration for Optimal Performance and Energy Architectures. IEEE Trans. Computers 70 (12) (2021)
Jose Manuel Herruzo, Sonia González-Navarro, Pablo Ibáñez-Marín, Víctor Viñals Yúfera, Jesús Alastruey-Benedé, Oscar G. Plata
Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Jose Manuel Herruzo, Sonia González-Navarro, Pablo Ibáñez, Víctor Viñals, Jesús Alastruey-Benedé, Oscar G. Plata
Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding. DCC (2019)