Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor.
Jose Manuel HerruzoSonia González-NavarroPablo Ibáñez-MarínVíctor Viñals YúferaJesús Alastruey-BenedéOscar G. PlataPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2020)
Keyphrases
- multi core processors
- computer architecture
- sequence alignment
- high speed
- global alignment
- parallel processing
- indexing techniques
- index structure
- multi dimensional
- structural similarity
- multiple sequence alignment
- data sets
- similarity search
- input output
- database
- sequential data
- data structure
- genetic algorithm
- biological sequences
- neural network