Jonathan P. Bona

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 26

Top Topics

Semantic Representation

Top Venues

ICBO/BioCreative

AAAI Fall Symposia

Publications

Catherine C. Shoults, Michael Rutherford, Aaron S. Kemp, Merideth Addicott, Aliza Brown, Carolyn Greene, Corey J. Hayes, Jennifer Gan, Linda Larson-Prior, Jonathan P. Bona
Reddit Caregiver Support Forums: NLP and Visualization for Digestion of Complex Themes. AMIA (2022)
Alexander P. Cox, Kiernan L. Johnson, Lauren Wishnie, Aaron S. Kemp, Jonathan P. Bona, Alexander D. Diehl
Recent Refinements of the NeuroPsychological Testing Ontology. ICBO (2021)
Jonathan P. Bona, Aaron S. Kemp, Carli Cox, Tracy S. Nolan, Lakshmi Pillai, Aparna Das, James E. Galvin, Linda Larson-Prior, Tuhin Virmani, Fred W. Prior
Semantic Integration of Multi-Modal Data and Derived Neuroimaging Results Using the Platform for Imaging in Precision Medicine (PRISM) in the Arkansas Imaging Enterprise System (ARIES). Frontiers Artif. Intell. 4 (2021)
Jonathan P. Bona
A Python Utility for Working with OBO Foundry Terms (short paper). ICBO/ODLS (2020)
Jonathan P. Bona, Aaron S. Kemp, Tracy S. Nolan, Linda J. Larson-Prior, Aparna Das, Tuhin Virmani, Lakshmi Pillai, Mathias Brochhausen, Fred W. Prior
Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies. ICBO (2019)
Corey J. Hayes, Jonathan P. Bona, Mathias Brochhausen
Using Semantic Representations for Urine Drug Tests in the Veterans Health Administration. AMIA (2019)
Jonathan P. Bona, Mathias Brochhausen, William R. Hogan
Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers. BMC Bioinform. (21) (2019)
Aaron S. Kemp, Jonathan P. Bona, Tracy S. Nolan, Linda J. Larson-Prior, Tuhin Virmani, Lakshmi Pillai, Mathias Brochhausen, Lawrence Tarbox, Fred W. Prior
Semantic Representations of Multi-Modal Data, NeuroInformatic Processing Pipelines, and Derived Neuroimaging Results in the Arkansas Image Enterprise System (ARIES). AMIA (2019)
Jonathan P. Bona, Joseph Utecht, Sarah Bost, Corey J. Hayes, Mathias Brochhausen
Building a Shared Ontology Use Patterns Repository. ICBO (2019)
Jonathan P. Bona, Joseph Utecht, Mathias Brochhausen
Providing a User-oriented Interface to Enable Semantic Queries in PRISM. AMIA (2019)
Jonathan P. Bona, Werner Ceusters
Mismatches between major subhierarchies and semantic tags in SNOMED CT. J. Biomed. Informatics 81 (2018)
Corey J. Hayes, Jonathan P. Bona, Mathias Brochhausen
Towards the Development of an Opioid Misuse Ontology. ICBO (2018)
Jonathan P. Bona, Tracy S. Nolan, Dillon Gibson, Mathias Brochhausen
Ontologies Enabling Non-image Data Queries in The Cancer Imaging Archive. AMIA (2018)
Mathias Brochhausen, Jonathan P. Bona, Bernd Blobel
The Role of Axiomatically-Rich Ontologies in Transforming Medical Data to Knowledge. pHealth (2018)
Jonathan P. Bona, Tracy S. Nolan, Mathias Brochhausen
Ontology-Enhanced Representations of Non-Image Data in The Cancer Image Archive. ICBO (2018)
Jonathan P. Bona, John Grohol, Meredith N. Zozus, Robert Zozus, Mathias Brochhausen
Toward Using Ontologies to Improve Results in Searches for Mental Health Information. ICBO (2017)
Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan P. Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Qinghua Wang, Jian Zhang, Abdelrahman Elsayed, Cathy H. Wu
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Res. 45 (Database-Issue) (2017)
Jonathan P. Bona, Werner Ceusters
Scrutinizing the Relationships Between SNOMED CT Concepts and Semantic Tags. ICBO (2017)
Joseph R. Utecht, Jonathan P. Bona, Mathias Brochhausen
Creating RDF Data on Trauma Care Organizations from Questionnaires. AMIA (2017)
Jonathan P. Bona
Does Semantic Tag Usage in SNOMED CT Match its Concept Hierarchy? AMIA (2017)
Jonathan P. Bona, Selja Seppälä, Werner Ceusters
Analysis of SNOMED "Bleeding" Concepts & Terms. ICBO/BioCreative (2016)
William D. Duncan, Travis Allen, Jonathan P. Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg, Alexander D. Diehl
The ImmPort Antibody Ontology. ICBO/BioCreative (2016)
Jonathan P. Bona, Werner Ceusters
Identifying Missing Finding Site Relations in SNOMED CT. AMIA (2016)
Werner Ceusters, Jonathan P. Bona
Representing SNOMED CT Concept Evolutions using Process Profiles. JOWO@FOIS (2016)
Thomas Bittner, Jonathan P. Bona, Werner Ceusters
Ontologies of Dynamical Systems and Verifiable Ontology-Based Computation: Towards a Haskell-Based Implementation of Referent Tracking. FOIS (2016)
Werner Ceusters, Jonathan P. Bona
Analyzing SNOMED CT's Historical Data: Pitfalls and Possibilities. AMIA (2016)
Jonathan P. Bona, Gunther Kohn, Alan Ruttenberg
Ontology-driven patient history questionnaires. ICBO (2015)
Daniel R. Schlegel, Jonathan P. Bona, Peter L. Elkin
Comparing Small Graph Retrieval Performance for Ontology Concepts in Medical Texts. Big-O(Q)/DMAH@VLDB (2015)
Jonathan P. Bona, Werner Ceusters
Replacing EHR structured data with explicit representations. ICBO (2015)
Jonathan P. Bona
An Ontology-Driven Patient History Questionnaire System. AMIA (2015)
Mark Jensen, Alexander P. Cox, Jonathan P. Bona, William D. Duncan, Patrick L. Ray, Alexander D. Diehl
Applications of OBI 'assay'. ICBO (2014)
Jonathan P. Bona, Alan Ruttenberg, Jenny Rouleau
Representing Modification Sites in PRO. ICBO (2014)
Patrick Beeson, David Kortenkamp, R. Peter Bonasso, Andreas Persson, Amy Loutfi, Jonathan P. Bona
An Ontology-Based Symbol Grounding System for Human-Robot Interaction. AAAI Fall Symposia (2014)
Albert Goldfain, Min Xu, Jonathan P. Bona, Barry Smith
Ontology Based Annotation of Contextualized Vital Signs. ICBO (2013)
Jonathan P. Bona, Stuart C. Shapiro
Modality in the MGLAIR Architecture. BICA (2012)
Stuart C. Shapiro, Jonathan P. Bona
The GLAIR Cognitive Architecture. Cognitive Robotics (2010)
Josephine Anstey, A. Patrice Seyed, Sarah Bay-Cheng, Dave Pape, Stuart C. Shapiro, Jonathan P. Bona, Stephen Hibit
The agent takes the stage. Int. J. Arts Technol. 2 (4) (2009)
Stuart C. Shapiro, Jonathan P. Bona
The GLAIR Cognitive Architecture. AAAI Fall Symposium: Biologically Inspired Cognitive Architectures (2009)