Jinhyuk Lee

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 58

Top Topics

Question Answering

Biomedical Text

Named Entity Recognition

Top Venues

Publications

Jinhyuk Lee, Zhuyun Dai, Xiaoqi Ren, Blair Chen, Daniel Cer, Jeremy R. Cole, Kai Hui, Michael Boratko, Rajvi Kapadia, Wen Ding, Yi Luan, Sai Meher Karthik Duddu, Gustavo Hernández Ábrego, Weiqiang Shi, Nithi Gupta, Aditya Kusupati, Prateek Jain, Siddhartha Reddy Jonnalagadda, Ming-Wei Chang, Iftekhar Naim
Gecko: Versatile Text Embeddings Distilled from Large Language Models. CoRR (2024)
Jinhyuk Lee, Anthony Chen, Zhuyun Dai, Dheeru Dua, Devendra Singh Sachan, Michael Boratko, Yi Luan, Sébastien M. R. Arnold, Vincent Perot, Siddharth Dalmia, Hexiang Hu, Xudong Lin, Panupong Pasupat, Aida Amini, Jeremy R. Cole, Sebastian Riedel, Iftekhar Naim, Ming-Wei Chang, Kelvin Guu
Can Long-Context Language Models Subsume Retrieval, RAG, SQL, and More? CoRR (2024)
Jinhyuk Lee, Zhuyun Dai, Sai Meher Karthik Duddu, Tao Lei, Iftekhar Naim, Ming-Wei Chang, Vincent Zhao
Rethinking the Role of Token Retrieval in Multi-Vector Retrieval. NeurIPS (2023)
Mujeen Sung, Jungsoo Park, Jaewoo Kang, Danqi Chen, Jinhyuk Lee
Optimizing Test-Time Query Representations for Dense Retrieval. ACL (Findings) (2023)
Jinhyuk Lee, Suwoong Lee, Min Young Kim
Visual Tactile Sensor based on Feature Tracking of Patterns for Soft Human-Machine Interaction. ICUFN (2023)
Jinhyuk Lee, Zhuyun Dai, Sai Meher Karthik Duddu, Tao Lei, Iftekhar Naim, Ming-Wei Chang, Vincent Y. Zhao
Rethinking the Role of Token Retrieval in Multi-Vector Retrieval. CoRR (2023)
Gyuwan Kim, Jinhyuk Lee, Barlas Oguz, Wenhan Xiong, Yizhe Zhang, Yashar Mehdad, William Yang Wang
Bridging the Training-Inference Gap for Dense Phrase Retrieval. EMNLP (Findings) (2022)
Aron Park, Minjae Joo, Kyungdoc Kim, Won-Joon Son, Gyutae Lim, Jinhyuk Lee, Jung Ho Kim, Dae Ho Lee, Seungyoon Nam
A comprehensive evaluation of regression-based drug responsiveness prediction models, using cell viability inhibitory concentrations (IC50 values). Bioinform. 38 (10) (2022)
Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon, Jinhyuk Lee, Jaewoo Kang
Simple Questions Generate Named Entity Recognition Datasets. EMNLP (2022)
Mujeen Sung, Jungsoo Park, Jaewoo Kang, Danqi Chen, Jinhyuk Lee
Refining Query Representations for Dense Retrieval at Test Time. CoRR (2022)
Mujeen Sung, Minbyul Jeong, Yonghwa Choi, Donghyeon Kim, Jinhyuk Lee, Jaewoo Kang
BERN2: an advanced neural biomedical named entity recognition and normalization tool. Bioinform. 38 (20) (2022)
Meijun Liu, Yi Bu, Chongyan Chen, Jian Xu, Daifeng Li, Yan Leng, Richard Barry Freeman, Eric T. Meyer, Wonjin Yoon, Mujeen Sung, Minbyul Jeong, Jinhyuk Lee, Jaewoo Kang, Chao Min, Min Song, Yujia Zhai, Ying Ding
Pandemics are catalysts of scientific novelty: Evidence from COVID-19. J. Assoc. Inf. Sci. Technol. 73 (8) (2022)
Seungyoon Nam, Sungyoung Lee, Sungjin Park, Jinhyuk Lee, Aron Park, Yon Hui Kim, Taesung Park
PATHOME-Drug: a subpathway-based polypharmacology drug-repositioning method. Bioinform. 38 (2) (2022)
Mujeen Sung, Minbyul Jeong, Yonghwa Choi, Donghyeon Kim, Jinhyuk Lee, Jaewoo Kang
BERN2: an advanced neural biomedical named entity recognition and normalization tool. CoRR (2022)
Gyuwan Kim, Jinhyuk Lee, Barlas Oguz, Wenhan Xiong, Yizhe Zhang, Yashar Mehdad, William Yang Wang
Bridging the Training-Inference Gap for Dense Phrase Retrieval. CoRR (2022)
Yujie Qian, Jinhyuk Lee, Sai Meher Karthik Duddu, Zhuyun Dai, Siddhartha Brahma, Iftekhar Naim, Tao Lei, Vincent Y. Zhao
Multi-Vector Retrieval as Sparse Alignment. CoRR (2022)
Zhaoping Xiong, Minji Jeon, Robert J. Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, Multi-Targeting Drug DREAM Challenge Community, Kristen K. Dang, Alex Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross Cagan
Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge. PLoS Comput. Biol. 17 (9) (2021)
Jinhyuk Lee, Alexander Wettig, Danqi Chen
Phrase Retrieval Learns Passage Retrieval, Too. AKBC (2021)
Christopher Sciavolino, Zexuan Zhong, Jinhyuk Lee, Danqi Chen
Simple Entity-Centric Questions Challenge Dense Retrievers. EMNLP (1) (2021)
Christopher Sciavolino, Zexuan Zhong, Jinhyuk Lee, Danqi Chen
Simple Entity-Centric Questions Challenge Dense Retrievers. CoRR (2021)
Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon, Jinhyuk Lee, Jaewoo Kang
Simple Questions Generate Named Entity Recognition Datasets. CoRR (2021)
Mujeen Sung, Jinhyuk Lee, Sean S. Yi, Minji Jeon, Sungdong Kim, Jaewoo Kang
Can Language Models be Biomedical Knowledge Bases? CoRR (2021)
Mujeen Sung, Jinhyuk Lee, Sean S. Yi, Minji Jeon, Sungdong Kim, Jaewoo Kang
Can Language Models be Biomedical Knowledge Bases? EMNLP (1) (2021)
Jinhyuk Lee, Alexander Wettig, Danqi Chen
Phrase Retrieval Learns Passage Retrieval, Too. CoRR (2021)
Jinhyuk Lee, Mujeen Sung, Jaewoo Kang, Danqi Chen
Learning Dense Representations of Phrases at Scale. ACL/IJCNLP (1) (2021)
Jinhyuk Lee, Alexander Wettig, Danqi Chen
Phrase Retrieval Learns Passage Retrieval, Too. EMNLP (1) (2021)
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang
BioBERT: a pre-trained biomedical language representation model for biomedical text mining. Bioinform. 36 (4) (2020)
Mujeen Sung, Hwisang Jeon, Jinhyuk Lee, Jaewoo Kang
Biomedical Entity Representations with Synonym Marginalization. ACL (2020)
Miyoung Ko, Jinhyuk Lee, Hyunjae Kim, Gangwoo Kim, Jaewoo Kang
Look at the First Sentence: Position Bias in Question Answering. CoRR (2020)
Mujeen Sung, Hwisang Jeon, Jinhyuk Lee, Jaewoo Kang
Biomedical Entity Representations with Synonym Marginalization. CoRR (2020)
Jungsoo Park, Mujeen Sung, Jinhyuk Lee, Jaewoo Kang
Adversarial Subword Regularization for Robust Neural Machine Translation. CoRR (2020)
Jinhyuk Lee, Sean S. Yi, Minbyul Jeong, Mujeen Sung, Wonjin Yoon, Yonghwa Choi, Miyoung Ko, Jaewoo Kang
Answering Questions on COVID-19 in Real-Time. CoRR (2020)
Miyoung Ko, Jinhyuk Lee, Hyunjae Kim, Gangwoo Kim, Jaewoo Kang
Look at the First Sentence: Position Bias in Question Answering. EMNLP (1) (2020)
Meijun Liu, Yi Bu, Chongyan Chen, Jian Xu, Daifeng Li, Yan Leng, Richard Barry Freeman, Eric Meyer, Wonjin Yoon, Mujeen Sung, Minbyul Jeong, Jinhyuk Lee, Jaewoo Kang, Min Song, Yujia Zhai, Ying Ding
Can pandemics transform scientific novelty? Evidence from COVID-19. CoRR (2020)
Jungsoo Park, Mujeen Sung, Jinhyuk Lee, Jaewoo Kang
Adversarial Subword Regularization for Robust Neural Machine Translation. EMNLP (Findings) (2020)
Jinhyuk Lee, Mujeen Sung, Jaewoo Kang, Danqi Chen
Learning Dense Representations of Phrases at Scale. CoRR (2020)
Jinhyuk Lee, Min Joon Seo, Hannaneh Hajishirzi, Jaewoo Kang
Contextualized Sparse Representations for Real-Time Open-Domain Question Answering. ACL (2020)
Jinhyuk Lee, Sean S. Yi, Minbyul Jeong, Mujeen Sung, Wonjin Yoon, Yonghwa Choi, Miyoung Ko, Jaewoo Kang
Answering Questions on COVID-19 in Real-Time. NLP4COVID@EMNLP (2020)
Min Joon Seo, Jinhyuk Lee, Tom Kwiatkowski, Ankur P. Parikh, Ali Farhadi, Hannaneh Hajishirzi
Real-Time Open-Domain Question Answering with Dense-Sparse Phrase Index. CoRR (2019)
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang
BioBERT: a pre-trained biomedical language representation model for biomedical text mining. CoRR (2019)
Wonjin Yoon, Jinhyuk Lee, Donghyeon Kim, Minbyul Jeong, Jaewoo Kang
Pre-trained Language Model for Biomedical Question Answering. PKDD/ECML Workshops (2) (2019)
Minji Jeon, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Sunkyu Kim, Yonghwa Choi, Aik Choon Tan, Jaewoo Kang
ReSimNet: drug response similarity prediction using Siamese neural networks. Bioinform. 35 (24) (2019)
Wonjin Yoon, Jinhyuk Lee, Donghyeon Kim, Minbyul Jeong, Jaewoo Kang
Pre-trained Language Model for Biomedical Question Answering. CoRR (2019)
SeongRyeol Moon, Curtis Balch, Sungjin Park, Jinhyuk Lee, Jiyong Sung, Seungyoon Nam
Systematic Inspection of the Clinical Relevance of TP53 Missense Mutations in Gastric Cancer. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Wonjin Yoon, Chan Ho So, Jinhyuk Lee, Jaewoo Kang
CollaboNet: collaboration of deep neural networks for biomedical named entity recognition. BMC Bioinform. (10) (2019)
Min Joon Seo, Jinhyuk Lee, Tom Kwiatkowski, Ankur P. Parikh, Ali Farhadi, Hannaneh Hajishirzi
Real-Time Open-Domain Question Answering with Dense-Sparse Phrase Index. ACL (1) (2019)
Jinhyuk Lee, Min Joon Seo, Hannaneh Hajishirzi, Jaewoo Kang
Contextualized Sparse Representation with Rectified N-Gram Attention for Open-Domain Question Answering. CoRR (2019)
Donghyeon Kim, Jinhyuk Lee, Chan Ho So, Hwisang Jeon, Minbyul Jeong, Yonghwa Choi, Wonjin Yoon, Mujeen Sung, Jaewoo Kang
A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining. IEEE Access 7 (2019)
Wonjin Yoon, Chan Ho So, Jinhyuk Lee, Jaewoo Kang
CollaboNet: collaboration of deep neural networks for biomedical named entity recognition. CoRR (2018)
Donghyeon Kim, Jinhyuk Lee, Donghee Choi, Jaehoon Choi, Jaewoo Kang
Learning User Preferences and Understanding Calendar Contexts for Event Scheduling. CoRR (2018)
Jinhyuk Lee, Seongjun Yun, Hyunjae Kim, Miyoung Ko, Jaewoo Kang
Ranking Paragraphs for Improving Answer Recall in Open-Domain Question Answering. EMNLP (2018)
Donghyeon Kim, Jinhyuk Lee, Donghee Choi, Jaehoon Choi, Jaewoo Kang
Learning User Preferences and Understanding Calendar Contexts for Event Scheduling. CIKM (2018)
Yonggyu Park, Junhyun Lee, Yookyung Koh, Inyeop Lee, Jinhyuk Lee, Jaewoo Kang
Typeface Completion with Generative Adversarial Networks. CoRR (2018)
Chunggyeom Kim, Jinhyuk Lee, Raehyun Kim, Youngbin Park, Jaewoo Kang
DeepNAP: Deep neural anomaly pre-detection in a semiconductor fab. Inf. Sci. (2018)
Jinhyuk Lee, Seongjun Yun, Hyunjae Kim, Miyoung Ko, Jaewoo Kang
Ranking Paragraphs for Improving Answer Recall in Open-Domain Question Answering. CoRR (2018)
Jinhyuk Lee, Hyunjae Kim, Miyoung Ko, Donghee Choi, Jaehoon Choi, Jaewoo Kang
Name Nationality Classification with Recurrent Neural Networks. IJCAI (2017)
Sang-Hoon Kim, Jinhyuk Lee, Jin-Soo Kim
GCMix: An Efficient Data Protection Scheme against the Paired Page Interference. ACM Trans. Storage 13 (4) (2017)
Hyojung Ryu, GyuTae Lim, Bong Hyun Sung, Jinhyuk Lee
NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores. Bioinform. 32 (4) (2016)
Joshua SungWoo Yang, Ji-han Kim, Sangho Oh, Gukjeong Han, Sanghyuk Lee, Jinhyuk Lee
STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures. Nucleic Acids Res. 40 (Database-Issue) (2012)
Tae-Rae Kim, Sangho Oh, Joshua SungWoo Yang, Sanghyuk Lee, Seokmin Shin, Jinhyuk Lee
A simplified homology-model builder toward highly protein-like structures: An inspection of restraining potentials. J. Comput. Chem. 33 (24) (2012)
Wonpil Im, Jinhyuk Lee, Taehoon Kim, Huan Rui
Novel free energy calculations to explore mechanisms and energetics of membrane protein structure and function. J. Comput. Chem. 30 (11) (2009)
Jinhyuk Lee, Sihyun Ham, Wonpil Im
Beta-hairpin restraint potentials for calculations of potentials of mean force as a function of beta-hairpin tilt, rotation, and distance. J. Comput. Chem. 30 (8) (2009)
Jinhyuk Lee, Wonpil Im
Implementation and application of helix-helix distance and crossing angle restraint potentials. J. Comput. Chem. 28 (3) (2007)
Taehwan Kim, Woojin Han, Jinhyuk Lee, Dowon Hyun, Ju-wook Jang
Performance Measurement of Car-To-Car Ad-hoc Networks In The Real World. WINSYS (2006)
Chang-hyeon Lim, Jinhyuk Lee, Taehwan Kim, Woojin Han, Dowon Hyun, Ju-wook Jang
Adaptive End-To-End Loss Differentiation Scheme for TCP Over Wired/Wireless Networks. WINSYS (2006)