Jin Chen

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 22

Top Topics

Top Venues

Briefings Bioinform.

Publications

Tao Wang, Han Shu, Jialu Hu, Yongtian Wang, Jin Chen, Jiajie Peng, Xuequn Shang
Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster. Briefings Bioinform. 25 (4) (2024)
Tao Wang, Zhihao Yan, Yiming Zhang, Zhuofei Lou, Xiaozhu Zheng, Duoduo Mai, Yongtian Wang, Xuequn Shang, Bing Xiao, Jiajie Peng, Jin Chen
postGWAS: A web server for deciphering the causality post the genome-wide association studies. Comput. Biol. Medicine 171 (2024)
Sajjad Fouladvand, Jeffery C. Talbert, Linda P. Dwoskin, Heather Bush, Amy Lynn Meadows, Lars E. Peterson, Yash R. Mishra, Steven K. Roggenkamp, Fei Wang, Ramakanth Kavuluru, Jin Chen
A Comparative Effectiveness Study on Opioid Use Disorder Prediction Using Artificial Intelligence and Existing Risk Models. IEEE J. Biomed. Health Informatics 27 (7) (2023)
Md. Selim, Jie Zhang, Michael A. Brooks, Ge Wang, Jin Chen
DiffusionCT: Latent Diffusion Model for CT Image Standardization. CoRR (2023)
Usman L. Abbas, Jin Chen, Qing Shao
Assessing Fairness of AlphaFold2 Prediction of Protein 3D Structures. BCB (2023)
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23 (1) (2022)
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
Correction to: Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23 (3) (2022)
Lucas Jing Liu, Victor Ortiz-Soriano, Javier A. Neyra, Jin Chen
KIT-LSTM: Knowledge-guided Time-aware LSTM for Continuous Clinical Risk Prediction. BIBM (2022)
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Gary Yeeming Ge, Jin Chen
Cross-Vendor CT Image Data Harmonization Using CVH-CT. AMIA (2021)
Zhenlan Liang, Min Li, Ruiqing Zheng, Yu Tian, Xuhua Yan, Jin Chen, Fang-Xiang Wu, Jianxin Wang
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement. Genom. Proteom. Bioinform. 19 (2) (2021)
Jiajie Peng, Linjiao Zhu, Yadong Wang, Jin Chen
Mining Relationships among Multiple Entities in Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Jiajie Peng, Junya Lu, Donghee Hoh, Ayesha S. Dina, Xuequn Shang, David M. Kramer, Jin Chen
Identifying emerging phenomenon in long temporal phenotyping experiments. Bioinform. 36 (2) (2020)
Oliver L. Tessmer, David M. Kramer, Jin Chen
OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics Data. BIBM (2018)
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
Joint Multi-Leaf Segmentation, Alignment, and Tracking for Fluorescence Plant Videos. IEEE Trans. Pattern Anal. Mach. Intell. 40 (6) (2018)
Tao Wang, Jiajie Peng, Yadong Wang, Jin Chen
Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks. BIBM (2018)
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
A novel method to measure the semantic similarity of HPO terms. Int. J. Data Min. Bioinform. 17 (2) (2017)
Yifan Yang, Lei Xu, Zheyun Feng, Jeffrey A. Cruz, Linda J. Savage, David M. Kramer, Jin Chen
PhenoCurve: capturing dynamic phenotype-environment relationships using phenomics data. Bioinform. 33 (9) (2017)
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
Measuring phenotype semantic similarity using Human Phenotype Ontology. BIBM (2016)
Jiajie Peng, Tao Wang, Jixuan Wang, Yadong Wang, Jin Chen
Extending gene ontology with gene association networks. Bioinform. 32 (8) (2016)
Daniel D. Morris, Saif M. Imran, Jin Chen, David M. Kramer
Growing Depth Image Superpixels for Foliage Modeling. CRV (2016)
Qiaozi Gao, Elisabeth Ostendorf, Jeffrey A. Cruz, Rong Jin, David M. Kramer, Jin Chen
Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis. Bioinform. 32 (1) (2016)
Jeffrey A. Cruz, Xi Yin, Xiaoming Liu, Saif M. Imran, Daniel D. Morris, David M. Kramer, Jin Chen
Multi-modality imagery database for plant phenotyping. Mach. Vis. Appl. 27 (5) (2016)
Jiajie Peng, Hongxiang Li, Yadong Wang, Jin Chen
A web tool for measuring gene semantic similarities by combining gene ontology and gene co-function networks. BCB (2015)
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
Joint Multi-Leaf Segmentation, Alignment and Tracking from Fluorescence Plant Videos. CoRR (2015)
Lei Xu, Jeffrey A. Cruz, Linda J. Savage, David M. Kramer, Jin Chen
Plant photosynthesis phenomics data quality control. Bioinform. 31 (11) (2015)
Jiajie Peng, Sahra Uygun, Taehyong Kim, Yadong Wang, Seung Y. Rhee, Jin Chen
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinform. 16 (2015)
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
Multi-leaf alignment from fluorescence plant images. WACV (2014)
Jiajie Peng, Hongxiang Li, Qinghua Jiang, Yadong Wang, Jin Chen
An integrative approach for measuring semantic similarities using gene ontology. BMC Syst. Biol. 8 (S-5) (2014)
Jiajie Peng, Yadong Wang, Jin Chen
Towards integrative gene functional similarity measurement. BMC Bioinform. 15 (S-2) (2014)
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
Multi-leaf tracking from fluorescence plant videos. ICIP (2014)
Jiajie Peng, Jin Chen, Yadong Wang
Identifying cross-category relations in gene ontology and constructing genome-specific term association networks. BMC Bioinform. 14 (S-2) (2013)
Oliver L. Tessmer, Yuhua Jiao, Jeffrey A. Cruz, David M. Kramer, Jin Chen
Functional approach to high-throughput plant growth analysis. BMC Syst. Biol. 7 (S-6) (2013)
Bruce A. Rosa, Yuhua Jiao, Sookyung Oh, Beronda L. Montgomery, Wensheng Qin, Jin Chen
Frequency-based time-series gene expression recomposition using PRIISM. BMC Syst. Biol. 6 (2012)
Bruce A. Rosa, Ji Zhang, Ian T. Major, Wensheng Qin, Jin Chen
Optimal timepoint sampling in high-throughput gene expression experiments. Bioinform. 28 (21) (2012)
Yuhua Jiao, Bruce A. Rosa, Sookyung Oh, Beronda L. Montgomery, Wensheng Qin, Jin Chen
Detection and Decomposition: Treatment-induced Cyclic gene Expression Disruption in High-Throughput Time-Series Datasets. J. Bioinform. Comput. Biol. 10 (6) (2012)