Hansheng Xue

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 21

Top Topics

Semantic Similarity

Network Topology

Similarity Measure

Top Venues

Briefings Bioinform.

Publications

Aishwarya Jayagopal, Hansheng Xue, Ziyang He, Robert J. Walsh, Krishna Kumar Hariprasannan, David Shao Peng Tan, Tuan Zea Tan, Jason J. Pitt, Anand D. Jeyasekharan, Vaibhav Rajan
Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information. KDD (2024)
Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan
Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning. ICLR (2024)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings Bioinform. 25 (5) (2024)
Aishwarya Jayagopal, Hansheng Xue, Ziyang He, Robert J. Walsh, Krishna Kumar Hariprasannan, David Shao Peng Tan, Tuan Zea Tan, Jason J. Pitt, Anand D. Jeyasekharan, Vaibhav Rajan
Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information. CoRR (2024)
Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin
RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning. AAAI (2022)
Hansheng Xue, Vaibhav Rajan, Yu Lin
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. CoRR (2022)
Hansheng Xue, Vaibhav Rajan, Yu Lin
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. NeurIPS (2022)
Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, Yu Lin
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks. CoRR (2021)
Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, Yu Lin
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks. WWW (2021)
Jiajie Peng, Hansheng Xue, Zhongyu Wei, Idil Tuncali, Jianye Hao, Xuequn Shang
Integrating multi-network topology for gene function prediction using deep neural networks. Briefings Bioinform. 22 (2) (2021)
Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin
RepBin: Constraint-based Graph Representation Learning for Metagenomic Binning. CoRR (2021)
Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, Yu Lin
Modeling Dynamic Heterogeneous Network for Link Prediction Using Hierarchical Attention with Temporal RNN. ECML/PKDD (1) (2020)
Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, Yu Lin
Modeling Dynamic Heterogeneous Network for Link Prediction using Hierarchical Attention with Temporal RNN. CoRR (2020)
Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology. BMC Bioinform. (18) (2019)
Hansheng Xue, Jiajie Peng, Jiying Li, Xuequn Shang
Integrating Multi-Network Topology via Deep Semi-supervised Node Embedding. CIKM (2019)
Hansheng Xue, Jiajie Peng, Xuequn Shang
Towards Gene Function Prediction via Multi-Networks Representation Learning. AAAI (2019)
Hansheng Xue, Jiajie Peng, Xuequn Shang
Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO. BMC Syst. Biol. (2) (2019)
Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang
TSGOE: A web tool for tissue-specific gene ontology enrichment. BIBM (2018)
Hansheng Xue, Jiajie Peng, Xuequn Shang
Deep Feature Learning of Multi-Network Topology for Node Classification. CoRR (2018)
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
A novel method to measure the semantic similarity of HPO terms. Int. J. Data Min. Bioinform. 17 (2) (2017)
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
Measuring phenotype semantic similarity using Human Phenotype Ontology. BIBM (2016)