Anuradha Wickramarachchi

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Topics

Student Learning

Distance Calculation

Computing Environments

Top Venues

Algorithms Mol. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings Bioinform. 25 (5) (2024)
Anuradha Wickramarachchi, Yu Lin
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Anuradha Wickramarachchi, Yu Lin
Binning long reads in metagenomics datasets using composition and coverage information. Algorithms Mol. Biol. 17 (1) (2022)
Anuradha Wickramarachchi, Yu Lin
Metagenomics Binning of Long Reads Using Read-Overlap Graphs. RECOMB-CG (2022)
Anuradha Wickramarachchi, Yu Lin
LRBinner: Binning Long Reads in Metagenomics Datasets. WABI (2021)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
Improving metagenomic binning results with overlapped bins using assembly graphs. Algorithms Mol. Biol. 16 (1) (2021)
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin
MetaBCC-LR: metagenomics binning by coverage and composition for long reads. Bioinform. 36 (Supplement-1) (2020)
Ayesh Weerasinghe, Kalana Wijethunga, Randika Jayasekara, Indika Perera, Anuradha Wickramarachchi
Resource Aware Task Clustering for Scientific Workflow Execution in High Performance Computing Environments. HPCC/DSS/SmartCity (2020)
Kalana Wijegunarathna, Uditha Maduranga, Sadeep Weerasinghe, Indika Perera, Anuradha Wickramarachchi
MetaG: a comprehensive visualization tool to explore metagenomes. BIBM (2020)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. WABI (2020)
Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi
Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation. Int. J. Online Biomed. Eng. 16 (7) (2020)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
GraphBin: refined binning of metagenomic contigs using assembly graphs. Bioinform. 36 (11) (2020)
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita
Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows. TALE (2018)
Anuradha Wickramarachchi, Dulaj Atapattu, Pamoda Wimalasiri, Ravidu Mallawa Arachchi, Gihan Dias
Use of nomadic computing devices for storage synchronization. ICOIN (2018)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
Efficient Bioinformatics Computations through GPU Accelerated Web Services. ICACS (2018)