Vijini Mallawaarachchi

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Topics

Experiential Learning

Change Detection

Top Venues

J. Open Source Softw.

J. Comput. Biol.

Publications

George Bouras, Susanna R. Grigson, Bhavya Nalagampalli Papudeshi, Vijini Mallawaarachchi, Michael J. Roach
Dnaapler: A tool to reorient circular microbial genomes. J. Open Source Softw. 9 (94) (2024)
Michael J. Roach, Bradley J. Hart, Sarah J. Beecroft, Bhavya Nalagampalli Papudeshi, Laura K. Inglis, Susanna R. Grigson, Vijini Mallawaarachchi, George Bouras, Robert A. Edwards
Koverage: Read-coverage analysis for massive (meta)genomics datasets. J. Open Source Softw. 9 (96) (2024)
Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan
Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning. ICLR (2024)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings Bioinform. 25 (5) (2024)
Vijini Mallawaarachchi, Michael J. Roach, Przemyslaw Decewicz, Bhavya Nalagampalli Papudeshi, Sarah K. Giles, Susanna R. Grigson, George Bouras, Ryan D. Hesse, Laura K. Inglis, Abbey L. K. Hutton, Elizabeth A. Dinsdale, Robert A. Edwards
Phables: from fragmented assemblies to high-quality bacteriophage genomes. Bioinform. 39 (10) (2023)
Sunera Chandrasiri, Thumula Perera, Anjala Dilhara, Indika Perera, Vijini Mallawaarachchi
CH-Bin: A convex hull based approach for binning metagenomic contigs. Comput. Biol. Chem. 100 (2022)
Michael J. Roach, N. Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Nalagampalli Papudeshi, Scott A. Handley, C. Titus Brown, Nathan S. Watson-Haigh, Robert A. Edwards
Ten simple rules and a template for creating workflows-as-applications. PLoS Comput. Biol. 18 (12) (2022)
Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin
RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning. AAAI (2022)
Vijini Mallawaarachchi, Yu Lin
Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs. J. Comput. Biol. 29 (12) (2022)
Vijini Mallawaarachchi, Yu Lin
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs. RECOMB (2022)
Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin
RepBin: Constraint-based Graph Representation Learning for Metagenomic Binning. CoRR (2021)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
Improving metagenomic binning results with overlapped bins using assembly graphs. Algorithms Mol. Biol. 16 (1) (2021)
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin
MetaBCC-LR: metagenomics binning by coverage and composition for long reads. Bioinform. 36 (Supplement-1) (2020)
Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Madhushanka, Eranga Heshan, Dulani Meedeniya, Sampath Jayarathna
Change Detection and Notification of Web Pages: A Survey. ACM Comput. Surv. 53 (1) (2020)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. WABI (2020)
Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi
Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation. Int. J. Online Biomed. Eng. 16 (7) (2020)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
GraphBin: refined binning of metagenomic contigs using assembly graphs. Bioinform. 36 (11) (2020)
Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna
Change Detection and Notification of Webpages: A Survey. CoRR (2019)
Lakmal Meegahapola, Vijini Mallawaarachchi, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna
Random Forest Classifier based Scheduler Optimization for Search Engine Web Crawlers. ICSCA (2018)
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita
Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows. TALE (2018)
Vijini Mallawaarachchi, Anuradha Wickaramarachchi, Anuradha Weliwita, Indika Perera, Dulani Meedeniya
Experiential Learning in Bioinformatics - Learner Support for Complex Workflow Modelling and Analysis. iJET 13 (12) (2018)
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
Efficient Bioinformatics Computations through GPU Accelerated Web Services. ICACS (2018)
Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Vijini Mallawaarachchi, Dulani Meedeniya, Sampath Jayarathna
Optimizing change detection in distributed digital collections: An architectural perspective of change detection. SNPD (2017)