Huiying Zhao

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 44

Top Topics

Convolutional Network

Protein Structure

Top Venues

Briefings Bioinform.

Publications

Siying Lin, Juanjuan Yong, Lei Zhang, Xiaolong Chen, Liang Qiao, Weidong Pan, Yuedong Yang, Huiying Zhao
Applying image features of proximal paracancerous tissues in predicting prognosis of patients with hepatocellular carcinoma. Comput. Biol. Medicine 173 (2024)
Tongyue Shi, Jun Ma, Zihan Yu, Haowei Xu, Minqi Xiong, Meirong Xiao, Yilin Li, Huiying Zhao, Guilan Kong
Stochastic Parrots or ICU Experts? Large Language Models in Critical Care Medicine: A Scoping Review. CoRR (2024)
Jiancong Xie, Jiahua Rao, Junjie Xie, Huiying Zhao, Yuedong Yang
Predicting disease-gene associations through self-supervised mutual infomax graph convolution network. Comput. Biol. Medicine 170 (2024)
Huiying Zhao, Jie Li, Jieqiong Zhang, Xin Wang, Li Xia
Improving the Performance of Intelligent Photo Compliance Detection Method Based on Diffusion Model for Telecom User Management. ICIC (LNAI 6) (2024)
Hua Chai, Siyin Lin, Junqi Lin, Minfan He, Yuedong Yang, Yongzhong OuYang, Huiying Zhao
An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome. BMC Bioinform. 25 (1) (2024)
Tongyue Shi, Zhilong Zhang, Wentie Liu, Junhua Fang, Jianguo Hao, Shuai Jin, Huiying Zhao, Guilan Kong
Identifying Subgroups of ICU Patients Using End-to-End Multivariate Time-Series Clustering Algorithm Based on Real-World Vital Signs Data. CoRR (2023)
Yue Wang, Wei Gao, Xinzhou Cheng, Xin Wang, Huiying Zhao, Zhipu Xie, Lexi Xu
Multi-Granularity Cross-Attention Network for Visual Question Answering. TrustCom (2023)
Fudan Zheng, Yuedong Yang, Tianxin Lin, Shaoxu Wu, Yong Li, Yutong Lu, Ying Song, Zhiguang Chen, Huiying Zhao
Accurately Identifying Muscle-Invasive Bladder Cancer from MRI via Weakly Supervised Learning. BIBM (2023)
Yidong Song, Qianmu Yuan, Huiying Zhao, Yuedong Yang
Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures. Briefings Bioinform. 24 (6) (2023)
Rui Hao, Ming Sheng, Yong Zhang, Huiying Zhao, Chenxiao Hao, Wenyao Li, Luoxi Wang, Chao Li
Enhancing Clustering Performance in Sepsis Time Series Data Using Gravity Field. HIS (2023)
Siying Lin, Haoyang Zhang, Mengling Qi, David N. Cooper, Yuedong Yang, Yuanhao Yang, Huiying Zhao
Inferring the genetic relationship between brain imaging-derived phenotypes and risk of complex diseases by Mendelian randomization and genome-wide colocalization. NeuroImage 279 (2023)
Bin Yang, Xinyang Tong, Ying Xing, Qi Shen, Huiying Zhao, Zhipu Xie
Temporal Semantic Attention Network for Aspect-Based Sentiment Analysis. DEXA (2) (2023)
Rui Gu, Huiying Zhao, Chang Zhou
Interventions to Reduce Misinformation Dissemination on Social Media: A Systematic Literature Review. PACIS (2023)
Qianmu Yuan, Junjie Xie, Jiancong Xie, Huiying Zhao, Yuedong Yang
Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion. Briefings Bioinform. 24 (3) (2023)
Xinfeng Wang, Mengling Qi, Chengzhi Dong, Haoyang Zhang, Yuedong Yang, Huiying Zhao
Accurately Identifying Coronary Atherosclerotic Heart Disease through Merged Beats of Electrocardiogram. BIBM (2022)
Xinfeng Wang, Haoyang Zhang, Xuehao Xiu, Mengling Qi, Yuedong Yang, Huiying Zhao
Genetic and phenotypic relationships between coronary atherosclerotic heart disease and electrocardiographic traits. BIBM (2022)
Zeyu Wang, Huiying Zhao, Peng Ren, Yuxi Zhou, Ming Sheng
Learning Optimal Treatment Strategies for Sepsis Using Offline Reinforcement Learning in Continuous Space. HIS (2022)
Zeyu Wang, Huiying Zhao, Peng Ren, Yuxi Zhou, Ming Sheng
Learning Optimal Treatment Strategies for Sepsis Using Offline Reinforcement Learning in Continuous Space. CoRR (2022)
Ken Chen, Huiying Zhao, Yuedong Yang
Capturing large genomic contexts for accurately predicting enhancer-promoter interactions. Briefings Bioinform. 23 (2) (2022)
Qianmu Yuan, Sheng Chen, Jiahua Rao, Shuangjia Zheng, Huiying Zhao, Yuedong Yang
AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Briefings Bioinform. 23 (2) (2022)
Ziwang Huang, Liang Li, Xiang Zhang, Ying Song, Jianwen Chen, Huiying Zhao, Yutian Chong, Hejun Wu, Yuedong Yang, Jun Shen, Yunfei Zha
A coarse-refine segmentation network for COVID-19 CT images. IET Image Process. 16 (2) (2022)
Zhe Sun, Shuangjia Zheng, Huiying Zhao, Zhangming Niu, Yutong Lu, Yi Pan, Yuedong Yang
To Improve Prediction of Binding Residues With DNA, RNA, Carbohydrate, and Peptide Via Multi-Task Deep Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Qianmu Yuan, Sheng Chen, Yu Wang, Huiying Zhao, Yuedong Yang
Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning. Briefings Bioinform. 23 (6) (2022)
Zhilong Zhang, Guilan Kong, Shuai Jin, Huiying Zhao
Identifying Patient Subgroups with Different Mortality Risks in ICU Based on Dynamically Acquired Clinical Data. AMIA (2022)
Haoyang Zhang, Junkang Wei, Zifeng Liu, Xun Liu, Yutian Chong, Yutong Lu, Huiying Zhao, Yuedong Yang
DGAT-onco: A differential analysis method to detect oncogenes by integrating functional information of mutations. BIBM (2021)
Jianwen Chen, Shuangjia Zheng, Huiying Zhao, Yuedong Yang
Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map. J. Cheminformatics 13 (1) (2021)
Ying Song, Shuangjia Zheng, Liang Li, Xiang Zhang, Xiaodong Zhang, Ziwang Huang, Jianwen Chen, Ruixuan Wang, Huiying Zhao, Yutian Chong, Jun Shen, Yunfei Zha, Yuedong Yang
Deep Learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) With CT Images. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Hua Chai, Xiang Zhou, Zhongyue Zhang, Jiahua Rao, Huiying Zhao, Yuedong Yang
Integrating multi-omics data through deep learning for accurate cancer prognosis prediction. Comput. Biol. Medicine 134 (2021)
Xiang Zhou, Hua Chai, Yuansong Zeng, Huiying Zhao, Yuedong Yang
scAdapt: virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species. Briefings Bioinform. 22 (6) (2021)
Qianmu Yuan, Jianwen Chen, Huiying Zhao, Yaoqi Zhou, Yuedong Yang
Structure-aware protein-protein interaction site prediction using deep graph convolutional network. Bioinform. 38 (1) (2021)
Bailing Zhou, Baohua Ji, Kui Liu, Guodong Hu, Fei Wang, Qingshuai Chen, Ru Yu, Pingping Huang, Jing Ren, Chengang Guo, Huiying Zhao, Hongmei Zhang, Dongbo Zhao, Zhiwei Li, Qiangcheng Zeng, Jiafeng Yu, Yunqiang Bian, Zanxia Cao, Shicai Xu, Yuedong Yang, Yaoqi Zhou, Jihua Wang
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. Nucleic Acids Res. 49 (Database-Issue) (2021)
Yufeng Cai, Xiongjun Li, Zhe Sun, Yutong Lu, Huiying Zhao, Jack Hanson, Kuldip K. Paliwal, Thomas Litfin, Yaoqi Zhou, Yuedong Yang
SPOT-Fold: Fragment-Free Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map. J. Comput. Chem. 41 (8) (2020)
Sheng Chen, Zhe Sun, Lihua Lin, Zifeng Liu, Xun Liu, Yutian Chong, Yutong Lu, Huiying Zhao, Yuedong Yang
To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map. J. Chem. Inf. Model. 60 (1) (2020)
Huiying Zhao, Dalin Qian, Ying Lv, Bo Zhang, Rongyu Liang
Development of a global positioning system data-based trip-purpose inference method for hazardous materials transportation management. J. Intell. Transp. Syst. 24 (1) (2020)
Ankur Sarker, Fan Yao, Haiying Shen, Huiying Zhao, Haoran Zhu, Haroon Lone, Laura Barnes, Brad Campbell, Mitchel Rosen
Deep Learning Based Prediction Towards Designing A Smart Building Assistant System. MASS (2020)
Cong Fan, Ping-pui Wong, Huiying Zhao
DStruBTarget: Integrating Binding Affinity with Structure Similarity for Ligand-Binding Protein Prediction. J. Chem. Inf. Model. 60 (1) (2020)
Yaobin Ke, Jiahua Rao, Huiying Zhao, Yutong Lu, Nong Xiao, Yuedong Yang
Accurate prediction of genome-wide RNA secondary structure profile based on extreme gradient boosting. Bioinform. 36 (17) (2020)
Pin Chen, Yaobin Ke, Yutong Lu, Yunfei Du, Jiahui Li, Hui Yan, Huiying Zhao, Yaoqi Zhou, Yuedong Yang
DLIGAND2: an improved knowledge-based energy function for protein-ligand interactions using the distance-scaled, finite, ideal-gas reference state. J. Cheminformatics 11 (1) (2019)
Huiying Zhao, Mingguo Hong, Wei Lin, Kenneth A. Loparo
Voltage and Frequency Regulation of Microgrid With Battery Energy Storage Systems. IEEE Trans. Smart Grid 10 (1) (2019)
Dongxu Ren, Zexiang Zhao, Jianpu Xi, Bin Li, Zhengfeng Li, Huiying Zhao, Lujun Cui, Hang Xu
Alignment Method for Linear-Scale Projection Lithography Based on CCD Image Analysis. Sensors 18 (8) (2018)
Bailing Zhou, Huiying Zhao, Jia-Feng Yu, Chengang Guo, Xianghua Dou, Feng Song, Guodong Hu, Zanxia Cao, Yuanxu Qu, Yuedong Yang, Yaoqi Zhou, Jihua Wang
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. Nucleic Acids Res. 46 (Database-Issue) (2018)
Hang Meng, Xiaohui Ye, Mingyu Yang, Xinli Song, Zhida Su, Wenzhuo Liu, Lingtong Luo, Huiying Zhao
Equivalent modeling and simulation for PV system on dynamic clustering equivalent strategy. IECON (2017)
Daocheng Yuan, Huiying Zhao, Xin Tao, Shaobo Li, Xueliang Zhu, Chupeng Zhang
Aspheric Surface Measurement Using Capacitive Sensors. Sensors 17 (6) (2017)
Dongxu Ren, Huiying Zhao, Chupeng Zhang, Daocheng Yuan, Jianpu Xi, Xueliang Zhu, Xinxing Ban, Longchao Dong, Yawen Gu, Chunye Jiang
Multi-Repeated Projection Lithography for High-Precision Linear Scale Based on Average Homogenization Effect. Sensors 16 (4) (2016)
Jia-Feng Yu, Xianghua Dou, Hong-Bo Wang, Xiao Sun, Huiying Zhao, Ji-Hua Wang
A Novel Cylindrical Representation for Characterizing Intrinsic Properties of Protein Sequences. J. Chem. Inf. Model. 55 (6) (2015)
Huiying Zhao, Yuedong Yang, Mark von Itzstein, Yaoqi Zhou
Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction. J. Comput. Chem. 35 (30) (2014)
Yuedong Yang, Eshel Faraggi, Huiying Zhao, Yaoqi Zhou
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates. Bioinform. 27 (15) (2011)
Huiying Zhao, Yuedong Yang, Yaoqi Zhou
Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function. Bioinform. 26 (15) (2010)