Fan Zhang

ORCID

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 80

Top Venues

ISBI

CoRR

NeuroImage

IEEE Trans. Medical Imaging

University of Sydney, Australia (PHD)

Education History

University of Sydney, Australia

PHD

Publications

Tengfei Xue, Hazhar Sufi Karimi, William Consagra, Fan Zhang, Weidong Cai, Lauren J. O'Donnell, Lipeng Ning, Yogesh Rathi
A Deep Learning Framework for Estimating Multi-Fiber PICASO Model Parameters of Tissue Microstructure Using Diffusion MRI. ISBI (2023)
Tengfei Xue, Yuqian Chen, Chaoyi Zhang, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
TractCloud: Registration-Free Tractography Parcellation with a Novel Local-Global Streamline Point Cloud Representation. MICCAI (8) (2023)
Hao Xu, Tengfei Xue, Dongnan Liu, Fan Zhang, Carl-Fredrik Westin, Ron Kikinis, Lauren J. O'Donnell, Weidong Cai
A Registration- and Uncertainty-Based Framework for White Matter Tract Segmentation with Only One Annotated Subject. ISBI (2023)
Yuqian Chen, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell
Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation. NeuroImage 273 (2023)
Yuxiang Wei, Yuqian Chen, Tengfei Xue, Leo R. Zekelman, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
A Deep Network for Explainable Prediction of Non-imaging Phenotypes Using Anatomical Multi-view Data. CDMRI@MICCAI (2023)
Nabil Vindas, Nicole Labra Avila, Fan Zhang, Tengfei Xue, Lauren J. O'Donnell, Jean-François Mangin
GeoLab: Geometry-Based Tractography Parcellation of Superficial White Matter. ISBI (2023)
Xiao Xu, Yuqian Chen, Leo R. Zekelman, Yogesh Rathi, Nikos Makris, Fan Zhang, Lauren J. O'Donnell
Tractography-Based Parcellation of Cerebellar Dentate Nuclei via a Deep Nonnegative Matrix Factorization Clustering Method. ISBI (2023)
Yuqian Chen, Fan Zhang, Leo R. Zekelman, Tengfei Xue, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
Tractgraphcnn: Anatomically Informed Graph CNN for Classification Using Diffusion MRI Tractography. ISBI (2023)
Sipei Li, Jianzhong He, Tengfei Xue, Guoqiang Xie, Shun Yao, Yuqian Chen, Erickson F. Torio, Yuanjing Feng, Dhiego Chaves de Almeida Bastos, Yogesh Rathi, Nikos Makris, Ron Kikinis, Wenya Linda Bi, Alexandra J. Golby, Lauren J. O'Donnell, Fan Zhang
DEEPRGVP: A novel microstructure-informed supervised contrastive learning framework for automated identification of the retinogeniculate pathway using dMRI tractography. ISBI (2023)
Yuqian Chen, Leo R. Zekelman, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. CoRR (2023)
Wan Liu, Yuqian Chen, Chuyang Ye, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
Fiber Tract Shape Measures Inform Prediction of Non-Imaging Phenotypes. CoRR (2023)
Tengfei Xue, Yuqian Chen, Chaoyi Zhang, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation. CoRR (2023)
Hao Xu, Tengfei Xue, Dongnan Liu, Fan Zhang, Carl-Fredrik Westin, Ron Kikinis, Lauren J. O'Donnell, Weidong Cai
A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation With Only One Annotated Subject. CoRR (2023)
Fan Zhang, Alessandro Daducci, Yong He, Simona Schiavi, Caio Seguin, Robert E. Smith, Chun-Hung Yeh, Tengda Zhao, Lauren J. O'Donnell
Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review. NeuroImage 249 (2022)
Fan Zhang, Tengfei Xue, Weidong Cai, Yogesh Rathi, Carl-Fredrik Westin, Lauren J. O'Donnell
TractoFormer: A Novel Fiber-level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers. CoRR (2022)
Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning. ISBI (2022)
Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Tom Weidong Cai, Lauren J. O'Donnell
White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. CoRR (2022)
Tengfei Xue, Fan Zhang, Leo R. Zekelman, Chaoyi Zhang, Yuqian Chen, Suheyla Cetin Karayumak, Steven D. Pieper, William M. Wells III, Yogesh Rathi, Nikos Makris, Weidong Cai, Lauren J. O'Donnell
A Novel Supervised Contrastive Regression Framework for Prediction of Neurocognitive Measures Using Multi-Site Harmonized Diffusion MRI Tractography. CoRR (2022)
Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
SupWMA: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning. CoRR (2022)
Fan Zhang, William M. Wells III, Lauren J. O'Donnell
Deep Diffusion MRI Registration (DDMReg): A Deep Learning Method for Diffusion MRI Registration. IEEE Trans. Medical Imaging 41 (6) (2022)
Tiange Xiang, Yang Song, Chaoyi Zhang, Dongnan Liu, Mei Chen, Fan Zhang, Heng Huang, Lauren O'Donnell, Weidong Cai
DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis. IEEE Trans. Medical Imaging 41 (8) (2022)
Leo R. Zekelman, Fan Zhang, Nikos Makris, Jianzhong He, Yuqian Chen, Tengfei Xue, Daniela Liera, Daniel L. Drane, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project. NeuroImage 246 (2022)
Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. MICCAI (1) (2022)
Yuxiang Wei, Tengfei Xue, Yogesh Rathi, Nikos Makris, Fan Zhang, Lauren J. O'Donnell
Age Prediction Performance Varies Across Deep, Superficial, and Cerebellar White Matter Connections. CoRR (2022)
Hao He, Fan Zhang, Steve Pieper, Nikos Makris, Yogesh Rathi, William M. Wells III, Lauren J. O'Donnell
Model and Predict Age and Sex in Healthy Subjects Using Brain White Matter Features: A Deep Learning Approach. ISBI (2022)
Yuqian Chen, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell
DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation. CoRR (2022)
Sipei Li, Jianzhong He, Tengfei Xue, Guoqiang Xie, Shun Yao, Yuqian Chen, Erickson F. Torio, Yuanjing Feng, Dhiego Chaves de Almeida Bastos, Yogesh Rathi, Nikos Makris, Ron Kikinis, Wenya Linda Bi, Alexandra J. Golby, Lauren J. O'Donnell, Fan Zhang
DeepRGVP: A Novel Microstructure-Informed Supervised Contrastive Learning Framework for Automated Identification Of The Retinogeniculate Pathway Using dMRI Tractography. CoRR (2022)
Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions. CoRR (2022)
Hao He, Fan Zhang, Steve Pieper, Nikos Makris, Yogesh Rathi, William M. Wells III, Lauren J. O'Donnell
Model and predict age and sex in healthy subjects using brain white matter features: A deep learning approach. CoRR (2022)
Fan Zhang, Tengfei Xue, Weidong Cai, Yogesh Rathi, Carl-Fredrik Westin, Lauren J. O'Donnell
TractoFormer: A Novel Fiber-Level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers. MICCAI (1) (2022)
Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. CoRR (2021)
Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. MICCAI (7) (2021)
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai
PDAM: A Panoptic-Level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images. IEEE Trans. Medical Imaging 40 (1) (2021)
Yuqian Chen, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Wojciech Chrzanowski, Weidong Cai
Celltrack R-CNN: A Novel End-To-End Deep Neural Network For Cell Segmentation And Tracking In Microscopy Images. ISBI (2021)
Yuqian Chen, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Wojciech Chrzanowski, Weidong Cai
CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy Images. CoRR (2021)
Fan Zhang, Kang Ik Kevin Cho, Yingying Tang, Tianhong Zhang, Sinead Kelly, Maria Di Biase, Lihua Xu, Huijun Li, Keshevan Matcheri, Susan L. Whitfield-Gabrieli, Margaret Niznikiewicz, William S. Stone, Jijun Wang, Martha Elizabeth Shenton, Ofer Pasternak
MK-Curve improves sensitivity to identify white matter alterations in clinical high risk for psychosis. NeuroImage 226 (2021)
Tiange Xiang, Yang Song, Chaoyi Zhang, Dongnan Liu, Mei Chen, Fan Zhang, Heng Huang, Lauren O'Donnell, Weidong Cai
DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis. CoRR (2021)
Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Perez, Catherine Lebel, Jess E Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage 243 (2021)
Fan Zhang, Anna Breger, Kang Ik Kevin Cho, Lipeng Ning, Carl-Fredrik Westin, Lauren J. O'Donnell, Ofer Pasternak
Deep learning based segmentation of brain tissue from diffusion MRI. NeuroImage 233 (2021)
Loraine Franke, Daniel Karl I. Weidele, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren J. O'Donnell, Yogesh Rathi, Daniel Haehn
FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects. PacificVis (2021)
Fan Zhang, Guoqiang Xie, Laura Leung, Michael A. Mooney, Lorenz Epprecht, Isaiah Norton, Yogesh Rathi, Ron Kikinis, Ossama Al-Mefty, Nikos Makris, Alexandra J. Golby, Lauren J. O'Donnell
Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification. NeuroImage 220 (2020)
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai
Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-Weighting. CVPR (2020)
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai
Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-weighting. CoRR (2020)
Fan Zhang, Suheyla Cetin Karayumak, Nico Hoffmann, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation. Medical Image Anal. 65 (2020)
Andrei Irimia, Di Fan, Nikhil N. Chaudhari, Van Ngo, Fan Zhang, Shantanu H. Joshi, Lauren J. O'Donnell
Mapping Cerebral Connectivity Changes after Mild Traumatic Brain Injury in Older Adults Using Diffusion Tensor Imaging and Riemannian Matching of Elastic Curves. ISBI (2020)
Daniel Haehn, Loraine Franke, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren O'Donnell, Yogesh Rathi
TRAKO: Efficient Transmission of Tractography Data for Visualization. CoRR (2020)
Loraine Franke, Daniel Karl I. Weidele, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren J. O'Donnell, Yogesh Rathi, Daniel Haehn
FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects. CoRR (2020)
Daniel Haehn, Loraine Franke, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren J. O'Donnell, Yogesh Rathi
TRAKO: Efficient Transmission of Tractography Data for Visualization. MICCAI (7) (2020)
Di Fan, Nikhil N. Chaudhari, Kenneth A. Rostowsky, Maria Calvillo, Sean K. Lee, Nahian F. Chowdhury, Fan Zhang, Lauren J. O'Donnell, Andrei Irimia
Post-Traumatic Cerebral Microhemorrhages and their Effects Upon White Matter Connectivity in the Aging Human Brain. EMBC (2019)
Fan Zhang, Nico Hoffmann, Suheyla Cetin Karayumak, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions. MICCAI (3) (2019)
Fan Zhang, Lipeng Ning, Lauren J. O'Donnell, Ofer Pasternak
MK-curve - Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal. NeuroImage 196 (2019)
Donghao Zhang, Yang Song, Dongnan Liu, Chaoyi Zhang, Yicheng Wu, Heng Wang, Fan Zhang, Yong Xia, Lauren J. O'Donnell, Weidong Cai
Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation. Australasian Conference on Artificial Intelligence (2019)
Dongnan Liu, Donghao Zhang, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Weidong Cai
Nuclei Segmentation via a Deep Panoptic Model with Semantic Feature Fusion. IJCAI (2019)
Fan Zhang, Peter Savadjiev, Weidong Cai, Yang Song, Yogesh Rathi, Birkan Tunç, Drew Parker, Tina Kapur, Robert T. Schultz, Nikos Makris, Ragini Verma, Lauren J. O'Donnell
Whole brain white matter connectivity analysis using machine learning: An application to autism. NeuroImage 172 (2018)
Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborah P. Waber, Borjan A. Gagoski, Kiera Sarill, Hesham M. Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, Lauren J. O'Donnell
Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis. NeuroImage 171 (2018)
Valerie J. Sydnor, Ana María Rivas-Grajales, Amanda E. Lyall, Fan Zhang, Sylvain Bouix, Sarina Karmacharya, Martha Elizabeth Shenton, Carl-Fredrik Westin, Nikos Makris, Demian Wassermann, Lauren J. O'Donnell, Marek Kubicki
A comparison of three fiber tract delineation methods and their impact on white matter analysis. NeuroImage 178 (2018)
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren J. O'Donnell, Weidong Cai
3D Large Kernel Anisotropic Network for Brain Tumor Segmentation. ICONIP (7) (2018)
Fan Zhang, Ye Wu, Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, Lauren J. O'Donnell
An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan. NeuroImage 179 (2018)
Ye Wu, Fan Zhang, Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, Yogesh Rathi, Yuanjing Feng, Huawang Wu, Lauren J. O'Donnell
Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder. NeuroImage 181 (2018)
Fan Zhang, Isaiah Norton, Weidong Cai, Yang Song, William M. Wells III, Lauren J. O'Donnell
Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency. ISBI (2017)
Fan Zhang, Pegah Kahali, Yannick Suter, Isaiah Norton, Laura Rigolo, Peter Savadjiev, Yang Song, Yogesh Rathi, Tom Weidong Cai, William M. Wells III, Alexandra J. Golby, Lauren J. O'Donnell
Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction. ISBI (2017)
Yang Song, Fan Zhang, Qing Li, Heng Huang, Lauren J. O'Donnell, Weidong Cai
Locally-Transferred Fisher Vectors for Texture Classification. ICCV (2017)
Yang Song, Qing Li, Fan Zhang, Heng Huang, Dagan Feng, Yue Wang, Mei Chen, Weidong Cai
Dual discriminative local coding for tissue aging analysis. Medical Image Anal. 38 (2017)
Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborah P. Waber, Borjan A. Gagoski, Kiera Sarill, Hesham M. Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, Lauren J. O'Donnell
Supra-Threshold Fiber Cluster Statistics for Data-Driven Whole Brain Tractography Analysis. MICCAI (1) (2017)
Fan Zhang, Yang Song, Weidong Cai, Alexander G. Hauptmann, Sidong Liu, Sonia Pujol, Ron Kikinis, Michael J. Fulham, David Dagan Feng, Mei Chen
Dictionary pruning with visual word significance for medical image retrieval. Neurocomputing 177 (2016)
Yang Song, Weidong Cai, Fan Zhang, Heng Huang, David Dagan Feng, Yue Wang, Mei Chen
Texture analysis of tissue aging using global and cluster constrained local coding. ISBI (2016)
Fan Zhang, Yang Song, Weidong Cai, Sidong Liu, Siqi Liu, Sonia Pujol, Ron Kikinis, Yong Xia, Michael J. Fulham, David Dagan Feng
Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging. IEEE Trans. Biomed. Eng. 63 (5) (2016)
Sidong Liu, Yang Song, Fan Zhang, Dagan Feng, Michael J. Fulham, Tom Weidong Cai
Clique Identification and Propagation for Multimodal Brain Tumor Image Segmentation. BIH (2016)
Zhenrui Chen, Yanmei Tie, Olutayo I. Olubiyi, Fan Zhang, Alireza Mehrtash, Laura Rigolo, Pegah Kahali, Isaiah Norton, Ofer Pasternak, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. Int. J. Comput. Assist. Radiol. Surg. 11 (8) (2016)
Fan Zhang, Peter Savadjiev, Tom Weidong Cai, Yang Song, Ragini Verma, Carl-Fredrik Westin, Lauren J. O'Donnell
Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. ISBI (2016)
Siqi Liu, Nur Hadi, Sidong Liu, Sonia Pujol, Ron Kikinis, Fan Zhang, Dagan Feng, Weidong Cai
Content-Based Retrieval of Brain Diffusion Magnetic Resonance Image. MRDM@ECIR (2015)
Fan Zhang, Yang Song, Siqi Liu, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Sidong Liu, David Dagan Feng, Tom Weidong Cai
Motion Representation of Ciliated Cell Images with Contour-Alignment for Automated CBF Estimation. MICCAI (3) (2015)
Sidong Liu, Weidong Cai, Siqi Liu, Fan Zhang, Michael J. Fulham, Dagan Feng, Sonia Pujol, Ron Kikinis
Multimodal neuroimaging computing: the workflows, methods, and platforms. Brain Informatics 2 (3) (2015)
Fan Zhang, Weidong Cai, Yang Song, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Dagan Feng
Beating cilia identification in fluorescence microscope images for accurate CBF measurement. ICIP (2015)
Fan Zhang, Yang Song, Tom Weidong Cai, Alexander G. Hauptmann, Sidong Liu, Siqi Liu, David Dagan Feng, Mei Chen
Ranking-Based Vocabulary Pruning in Bag-of-Features for Image Retrieval. ACALCI (2015)
Yang Song, Weidong Cai, Fan Zhang, Heng Huang, Yun Zhou, David Dagan Feng
Bone texture characterization with fisher encoding of local descriptors. ISBI (2015)
Fan Zhang, Yang Song, Weidong Cai, Adrien Depeursinge, Henning Müller
USYD/HES-SO in the VISCERAL Retrieval Benchmark. MRDM@ECIR (2015)
Sidong Liu, Weidong Cai, Siqi Liu, Fan Zhang, Michael J. Fulham, Dagan Feng, Sonia Pujol, Ron Kikinis
Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders. Brain Informatics 2 (3) (2015)
Yang Song, Weidong Cai, Qing Li, Fan Zhang, David Dagan Feng, Heng Huang
Fusing subcategory probabilities for texture classification. CVPR (2015)
Siqi Liu, Sidong Liu, Fan Zhang, Tom Weidong Cai, Sonia Pujol, Ron Kikinis, David Dagan Feng
Longitudinal brain MR retrieval with diffeomorphic demons registration: What happened to those patients with similar changes? ISBI (2015)
Fan Zhang, Weidong Cai, Yang Song, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Dagan Feng
Image-based ciliary beating frequency estimation for therapeutic assessment on defective mucociliary clearance diseases. ISBI (2014)
Fan Zhang, Yang Song, Sidong Liu, Sonia Pujol, Ron Kikinis, David Dagan Feng, Tom Weidong Cai
Latent Semantic Association for Medical Image Retrieval. DICTA (2014)
Fan Zhang, Yang Song, Weidong Cai, Min-Zhao Lee, Yun Zhou, Heng Huang, Shimin Shan, Michael J. Fulham, David Dagan Feng
Lung Nodule Classification With Multilevel Patch-Based Context Analysis. IEEE Trans. Biomed. Eng. 61 (4) (2014)
Fan Zhang, Yang Song, Weidong Cai, Yun Zhou, Michael J. Fulham, Stefan Eberl, Shimin Shan, Dagan Feng
A ranking-based lung nodule image classification method using unlabeled image knowledge. ISBI (2014)
Weidong Cai, Fan Zhang, Yang Song, Sidong Liu, Lingfeng Wen, Stefan Eberl, Michael J. Fulham, Dagan Feng
Automated feedback extraction for medical imaging retrieval. ISBI (2014)
Fan Zhang, Yang Song, Weidong Cai, Yun Zhou, Shimin Shan, Dagan Feng
Context Curves for Classification of Lung Nodule Images. DICTA (2013)
Fan Zhang, Weidong Cai, Yang Song, Min-Zhao Lee, Shimin Shan, David Dagan Feng
Overlapping node discovery for improving classification of lung nodules. EMBC (2013)

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Publication Activity (10 Years)

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Fan Zhang