Fernando Calamante

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 23

Top Topics

Functional Brain

Corpus Callosum

Top Venues

Artif. Intell. Medicine

Publications

Dongang Wang, Peilin Liu, Hengrui Wang, Heidi Beadnall, Kain Kyle, Linda Ly, Mariano Cabezas, Geng Zhan, Ryan Sullivan, Tom Weidong Cai, Wanli Ouyang, Fernando Calamante, Michael Barnett, Chenyu Wang
How Much Data are Enough? Investigating Dataset Requirements for Patch-Based Brain MRI Segmentation Tasks. CoRR (2024)
Lei Bai, Dongang Wang, Hengrui Wang, Michael Barnett, Mariano Cabezas, Weidong Cai, Fernando Calamante, Kain Kyle, Dongnan Liu, Linda Ly, Aria Nguyen, Chun-Chien Shieh, Ryan Sullivan, Geng Zhan, Wanli Ouyang, Chenyu Wang
Improving multiple sclerosis lesion segmentation across clinical sites: A federated learning approach with noise-resilient training. Artif. Intell. Medicine 152 (2024)
Marilena M. Demayo, Jinglei Lv, Shantel L. Duffy, Arkiev D'Souza, Loren Mowszowski, Sharon L. Naismith, Fernando Calamante
Hippocampal Neuronal Integrity and Functional Connectivity Within the Default Mode Network in Mild Cognitive Impairment: A Multimodal Investigation. Brain Connect. 13 (3) (2023)
Lei Bai, Dongang Wang, Michael Barnett, Mariano Cabezas, Weidong Cai, Fernando Calamante, Kain Kyle, Dongnan Liu, Linda Ly, Aria Nguyen, Chun-Chien Shieh, Ryan Sullivan, Hengrui Wang, Geng Zhan, Wanli Ouyang, Chenyu Wang
Improving Multiple Sclerosis Lesion Segmentation Across Clinical Sites: A Federated Learning Approach with Noise-Resilient Training. CoRR (2023)
Dongnan Liu, Mariano Cabezas, Dongang Wang, Zihao Tang, Lei Bai, Geng Zhan, Yuling Luo, Kain Kyle, Linda Ly, James Yu, Chun-Chien Shieh, Aria Nguyen, Ettikan Kandasamy Karuppiah, Ryan Sullivan, Fernando Calamante, Michael Barnett, Wanli Ouyang, Weidong Cai, Chenyu Wang
MS Lesion Segmentation: Revisiting Weighting Mechanisms for Federated Learning. CoRR (2022)
Caio Seguin, Sina Mansour L, Olaf Sporns, Andrew Zalesky, Fernando Calamante
Network communication models narrow the gap between the modular organization of structural and functional brain networks. NeuroImage 257 (2022)
Rui Zeng, Jinglei Lv, He Wang, Luping Zhou, Michael Barnett, Fernando Calamante, Chenyu Wang
FOD-Net: A deep learning method for fiber orientation distribution angular super resolution. Medical Image Anal. 79 (2022)
Natasha L. Taylor, Adora M. DSouza, B. R. Munn, J. Lv, Laszlo Zaborszky, Eli J. Müller, G. Wainstein, Fernando Calamante, James M. Shine
Structural connections between the noradrenergic and cholinergic system shape the dynamics of functional brain networks. NeuroImage 260 (2022)
Zihao Tang, Xinyi Wang, Mariano Cabezas, Arkiev D'Souza, Fernando Calamante, Dongnan Liu, Michael Barnett, Chenyu Wang, Tom Weidong Cai
Diffusion MRI Fibre Orientation Distribution Inpainting. CDMRI@MICCAI (2022)
Arnaud Attye, Félix Renard, Monica Baciu, Elise Roger, Laurent Lamalle, Patrick Dehail, Hélène Cassoudesalle, Fernando Calamante
TractLearn: A geodesic learning framework for quantitative analysis of brain bundles. NeuroImage 233 (2021)
Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Perez, Catherine Lebel, Jess E Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage 243 (2021)
Arush Honnedevasthana Arun, Alan Connelly, Robert Elton Smith, Fernando Calamante
Characterisation of white matter asymmetries in the healthy human brain using diffusion MRI fixel-based analysis. NeuroImage 225 (2021)
Oren Civier, Robert Elton Smith, Chun-Hung Yeh, Alan Connelly, Fernando Calamante
Is removal of weak connections necessary for graph-theoretical analysis of dense weighted structural connectomes from diffusion MRI? NeuroImage 194 (2019)
Xiaoyun Liang, Chun-Hung Yeh, Alan Connelly, Fernando Calamante
A Novel Method for Extracting Hierarchical Functional Subnetworks Based on a Multisubject Spectral Clustering Approach. Brain Connect. 9 (5) (2019)
Chun-Hung Yeh, Robert E. Smith, Thijs Dhollander, Fernando Calamante, Alan Connelly
Connectomes from streamlines tractography: Assigning streamlines to brain parcellations is not trivial but highly consequential. NeuroImage 199 (2019)
James A. Roberts, Alistair Perry, Anton R. Lord, Gloria M. P. Roberts, Philip B. Mitchell, Robert E. Smith, Fernando Calamante, Michael Breakspear
The contribution of geometry to the human connectome. NeuroImage 124 (2016)
Chun-Hung Yeh, Robert E. Smith, Xiaoyun Liang, Fernando Calamante, Alan Connelly
Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics. NeuroImage 142 (2016)
Thomas G. Close, Jacques-Donald Tournier, Leigh A. Johnston, Fernando Calamante, Iven Mareels, Alan Connelly
Fourier Tract Sampling (FouTS): A framework for improved inference of white matter tracts from diffusion MRI by explicitly modelling tract volume. NeuroImage 120 (2015)
Fernando Calamante, Robert E. Smith, Jacques-Donald Tournier, David Raffelt, Alan Connelly
Quantification of voxel-wise total fibre density: Investigating the problems associated with track-count mapping. NeuroImage 117 (2015)
Xiaoyun Liang, Alan Connelly, Fernando Calamante
Voxel-Wise Functional Connectomics Using Arterial Spin Labeling Functional Magnetic Resonance Imaging: The Role of Denoising. Brain Connect. 5 (9) (2015)
Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. NeuroImage 119 (2015)
Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
The effects of SIFT on the reproducibility and biological accuracy of the structural connectome. NeuroImage 104 (2015)
Amir Fazlollahi, Pierrick Bourgeat, Xiaoyun Liang, Fabrice Mériaudeau, Alan Connelly, Olivier Salvado, Fernando Calamante
Reproducibility of multiphase pseudo-continuous arterial spin labeling and the effect of post-processing analysis methods. NeuroImage 117 (2015)
Lisa Willats, David Raffelt, Robert E. Smith, Jacques-Donald Tournier, Alan Connelly, Fernando Calamante
Quantification of track-weighted imaging (TWI): Characterisation of within-subject reproducibility and between-subject variability. NeuroImage 87 (2014)
Kay Richards, Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Farnoosh Sadeghian, Alexander R. Retchford, Gabriel Davis Jones, Christopher A. Reid, David C. Reutens, Roger J. Ordidge, Alan Connelly, Steven Petrou
Mapping somatosensory connectivity in adult mice using diffusion MRI tractography and super-resolution track density imaging. NeuroImage 102 (2014)
Nyoman D. Kurniawan, Kay L. Richards, Zhengyi Yang, David She, Jeremy F. P. Ullmann, Randal X. Moldrich, Sha Liu, Javier Urriola Yaksic, Gayeshika Leanage, Irina Kharatishvili, Verena Wimmer, Fernando Calamante, Graham J. Galloway, Steven Petrou, David C. Reutens
Visualization of mouse barrel cortex using ex-vivo track density imaging. NeuroImage 87 (2014)
Xiaoyun Liang, Alan Connelly, Fernando Calamante
Graph analysis of resting-state ASL perfusion MRI data: Nonlinear correlations among CBF and network metrics. NeuroImage 87 (2014)
Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
SIFT: Spherical-deconvolution informed filtering of tractograms. NeuroImage 67 (2013)
Fernando Calamante, Richard A. J. Masterton, Jacques-Donald Tournier, Robert E. Smith, Lisa Willats, David Raffelt, Alan Connelly
Track-weighted functional connectivity (TW-FC): A tool for characterizing the structural-functional connections in the brain. NeuroImage 70 (2013)
Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information. NeuroImage 62 (3) (2012)
Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Zhengyi Yang, Erika Gyengesi, Graham J. Galloway, David C. Reutens, Alan Connelly
Super-resolution track-density imaging studies of mouse brain: Comparison to histology. NeuroImage 59 (1) (2012)
Fernando Calamante, Jacques-Donald Tournier, Robert E. Smith, Alan Connelly
A generalised framework for super-resolution track-weighted imaging. NeuroImage 59 (3) (2012)
Fernando Calamante, Alan Connelly
Comment on time-varying eddy currents effects on diffusion-weighting echo-planar imaging. NeuroImage 59 (2) (2012)
Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
MRtrix: Diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22 (1) (2012)
Xiaoyun Liang, Jacques-Donald Tournier, Richard A. J. Masterton, Alan Connelly, Fernando Calamante
-space sharing 3D GRASE pseudocontinuous ASL method for whole-brain resting-state functional connectivity. Int. J. Imaging Syst. Technol. 22 (1) (2012)
Fernando Calamante, Jacques-Donald Tournier, Robin M. Heidemann, Alfred Anwander, Graeme D. Jackson, Alan Connelly
Track density imaging (TDI): Validation of super resolution property. NeuroImage 56 (3) (2011)
Chun-Hung Yeh, Jacques-Donald Tournier, Kuan-Hung Cho, Ching-Po Lin, Fernando Calamante, Alan Connelly
The effect of finite diffusion gradient pulse duration on fibre orientation estimation in diffusion MRI. NeuroImage 51 (2) (2010)
Fernando Calamante, Jacques-Donald Tournier, Graeme D. Jackson, Alan Connelly
Track-density imaging (TDI): Super-resolution white matter imaging using whole-brain track-density mapping. NeuroImage 53 (4) (2010)
Thomas G. Close, Jacques-Donald Tournier, Fernando Calamante, Leigh A. Johnston, Iven M. Y. Mareels, Alan Connelly
A software tool to generate simulated white matter structures for the assessment of fibre-tracking algorithms. NeuroImage 47 (4) (2009)
Jacques-Donald Tournier, Chun-Hung Yeh, Fernando Calamante, Kuan-Hung Cho, Alan Connelly, Ching-Po Lin
Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data. NeuroImage 42 (2) (2008)
Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35 (4) (2007)
Alison Rowan, Faraneh Vargha-Khadem, Fernando Calamante, Jacques-Donald Tournier, Fenella J. Kirkham, Wui K. Chong, Torsten Baldeweg, Alan Connelly, David G. Gadian
Cortical abnormalities and language function in young patients with basal ganglia stroke. NeuroImage 36 (2) (2007)
Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly
Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage 23 (3) (2004)
Fernando Calamante, Peter J. Yim, Juan R. Cebral
Estimation of bolus dispersion effects in perfusion MRI using image-based computational fluid dynamics. NeuroImage 19 (2) (2003)
Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly
Diffusion-weighted magnetic resonance imaging fibre tracking using a front evolution algorithm. NeuroImage 20 (1) (2003)
Philipp G. Batchelor, Derek L. G. Hill, Fernando Calamante, David Atkinson
Study of Connectivity in the Brain Using the Full Diffusion Tensor from MRI. IPMI (2001)