Esa Pitkänen

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 5

Top Topics

Metabolic Networks

Medical Imaging

Voronoi Diagram

Top Venues

Briefings Bioinform.

IEEE Trans. Serv. Comput.

Publications

Joona Pohjonen, Carolin Stürenberg, Atte Föhr, Esa Pitkänen, Antti Rannikko, Tuomas Mirtti
Exposing and addressing the fragility of neural networks in digital pathology. CoRR (2022)
Dovydas Kiciatovas, Qingli Guo, Miika Kailas, Henri Pesonen, Jukka Corander, Samuel Kaski, Esa Pitkänen, Ville Mustonen
Identification of multiplicatively acting modulatory mutational signatures in cancer. BMC Bioinform. 23 (1) (2022)
Joona Pohjonen, Carolin Stürenberg, Antti Rannikko, Tuomas Mirtti, Esa Pitkänen
Training robust deep learning models for medical imaging tasks with spectral decoupling. CoRR (2021)
Bulat Zagidullin, Ziyan Wang, Yuanfang Guan, Esa Pitkänen, Jing Tang
Comparative analysis of molecular fingerprints in prediction of drug combination effects. Briefings Bioinform. 22 (6) (2021)
Daniel Valenzuela, Tuukka Norri, Niko Välimäki, Esa Pitkänen, Veli Mäkinen
Towards pan-genome read alignment to improve variation calling. BMC Genom. 19 (S2) (2018)
Rik Eshuis, Alex Norta, Oliver Kopp, Esa Pitkänen
Service Outsourcing with Process Views. IEEE Trans. Serv. Comput. 8 (1) (2015)
Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLoS Comput. Biol. 10 (2) (2014)
Esa Pitkänen, Mikko Arvas, Juho Rousu
Reconstructing Gapless Ancestral Metabolic Networks. BIOSTEC (Selected Papers) (2011)
Esa Pitkänen, Juho Rousu, Mikko Arvas
Minimum Mutation Algorithm for Gapless Metabolic Network Evolution. BIOINFORMATICS (2011)
Katja Astikainen, Esa Pitkänen, Juho Rousu, Liisa Holm, Sándor Szedmák
Reaction Kernels - Structured Output Prediction Approaches for Novel Enzyme Function. BIOINFORMATICS (2010)
Katja Astikainen, Liisa Holm, Esa Pitkänen, Sándor Szedmák, Juho Rousu
Structured Output Prediction of Novel Enzyme Function with Reaction Kernels. BIOSTEC (Selected Papers) (2010)
Esa Pitkänen, Paula Jouhten, Juho Rousu
Inferring branching pathways in genome-scale metabolic networks. BMC Syst. Biol. 3 (2009)
Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo
C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose. BMC Syst. Biol. 3 (2009)
Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J. Integr. Bioinform. 5 (2) (2008)
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen
A Computational Method for Reconstructing Gapless Metabolic Networks. BIRD (2008)
Ari Rantanen, Hannu Maaheimo, Esa Pitkänen, Juho Rousu, Esko Ukkonen
Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer Distributions for Flux Estimation. Trans. Comp. Sys. Biology 6 (2006)
Markus Heinonen, Ari Rantanen, Taneli Mielikäinen, Esa Pitkänen, Juha Kokkonen, Juho Rousu
Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data. German Conference on Bioinformatics (2006)
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen
Finding Feasible Pathways in Metabolic Networks. Panhellenic Conference on Informatics (2005)
Juho Rousu, Ari Rantanen, Hannu Maaheimo, Esa Pitkänen, Katja Saarela, Esko Ukkonen
A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information. CMSB (2003)