Paula Jouhten

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 2

Top Topics

Biological Data

Metabolic Networks

Reinforcement Learning

Perceptual Aliasing

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Jakob P. Pettersen, Sandra Castillo, Paula Jouhten, Eivind Almaas
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. BMC Bioinform. 24 (1) (2023)
Maryam Sabzevari, Sándor Szedmák, Merja Penttilä, Paula Jouhten, Juho Rousu
Strain design optimization using reinforcement learning. PLoS Comput. Biol. 18 (6) (2022)
Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLoS Comput. Biol. 10 (2) (2014)
Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. BMC Syst. Biol. 8 (2014)
Kristin Baumann, Marc Carnicer, Martin Dragosits, Alexandra Graf, Johannes Stadlmann, Paula Jouhten, Hannu Maaheimo, Brigitte Gasser, Joan Albiol, Diethard Mattanovich, Pau Ferrer
A multi-level study of recombinant Pichia pastoris in different oxygen conditions. BMC Syst. Biol. 4 (2010)
Subir K. Nandy, Paula Jouhten, Jens Nielsen
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation. BMC Syst. Biol. 4 (2010)
Esa Pitkänen, Paula Jouhten, Juho Rousu
Inferring branching pathways in genome-scale metabolic networks. BMC Syst. Biol. 3 (2009)
Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo
C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose. BMC Syst. Biol. 3 (2009)
Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J. Integr. Bioinform. 5 (2) (2008)
Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo
Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A. BMC Syst. Biol. 2 (2008)
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen
tracer experiments. BMC Bioinform. 9 (2008)