Matej Oresic

Publication Activity (10 Years)

Years Active: 1995-2021
Publications (10 Years): 1

Top Topics

Incomplete Data Sets

Unsupervised Learning

Top Venues

Briefings Bioinform.

BMC Syst. Biol.

Publications

Partho Sen, Santosh Lamichhane, Vivek B. Mathema, Aidan J. McGlinchey, Alex M. Dickens, Sakda Khoomrung, Matej Oresic
Deep learning meets metabolomics: a methodological perspective. Briefings Bioinform. 22 (2) (2021)
Tommi Vatanen, Maria Osmala, Tapani Raiko, Krista Lagus, Marko Sysi-Aho, Matej Oresic, Timo Honkela, Harri Lähdesmäki
Self-organization and missing values in SOM and GTM. Neurocomputing 147 (2015)
Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. BMC Syst. Biol. 8 (2014)
Tommi Suvitaival, Ilkka Huopaniemi, Matej Oresic, Samuel Kaski
Cross-Species Translation of Multi-way Biomarkers. ICANN (1) (2011)
Matti Kankainen, Peddinti V. Gopalacharyulu, Liisa Holm, Matej Oresic
MPEA - metabolite pathway enrichment analysis. Bioinform. 27 (13) (2011)
Marko Sysi-Aho, Andrey Ermolov, Peddinti V. Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen-Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Oresic
Metabolic Regulation in Progression to Autoimmune Diabetes. PLoS Comput. Biol. 7 (10) (2011)
Abhishek Tripathi, Arto Klami, Matej Oresic, Samuel Kaski
Matching samples of multiple views. Data Min. Knowl. Discov. 23 (2) (2011)
Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante
C isotopologue distributions. BMC Syst. Biol. 5 (2011)
Jan Budczies, Carsten Denkert, Berit M. Müller, Scarlet F. Brockmöller, Manfred Dietel, Jules L. Griffin, Matej Oresic, Oliver Fiehn
METAtarget - Extracting Key Enzymes of Metabolic Regulation from Highthroughput Metabolomics Data using KEGG REACTION Information. GCB (2010)
Ilkka Huopaniemi, Tommi Suvitaival, Matej Oresic, Samuel Kaski
Graphical Multi-way Models. ECML/PKDD (1) (2010)
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
Multivariate multi-way analysis of multi-source data. Bioinform. 26 (12) (2010)
Marko Sysi-Aho, Juha Koikkalainen, Jyrki Lötjönen, Tuulikki Seppänen-Laakso, Hans Söderlund, Tiina Heliö, Matej Oresic
Searching for Linear Dependencies between Heart Magnetic Resonance Images and Lipid Profiles. Algorithms and Applications (2010)
Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinform. 11 (2010)
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
Two-Way Analysis of High-Dimensional Collinear Data. ECML/PKDD (1) (2009)
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
Two-way analysis of high-dimensional collinear data. Data Min. Knowl. Discov. 19 (2) (2009)
Peddinti V. Gopalacharyulu, Erno Lindfors, Jarkko Miettinen, Catherine Bounsaythip, Matej Oresic
An integrative approach for biological data mining and visualisation. Int. J. Data Min. Bioinform. 2 (1) (2008)
Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic
Normalization method for metabolomics data using optimal selection of multiple internal standards. BMC Bioinform. 8 (2007)
Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Järvinen, Matej Oresic
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Laxman Yetukuri, Mikko Katajamaa, Gema Medina-Gómez, Tuulikki Seppänen-Laakso, Antonio Vidal-Puig, Matej Oresic
Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis. BMC Syst. Biol. 1 (2007)
Matej Oresic, Jyrki Lötjönen, Catherine Bounsaythip
megNet®: Visualization and Modelling Environment for Translational Medicine. ERCIM News 2007 (69) (2007)
Laura Elo, Henna Järvenpää, Matej Oresic, Riitta Lahesmaa, Tero Aittokallio
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Bioinform. 23 (16) (2007)
Mikko Katajamaa, Jarkko Miettinen, Matej Oresic
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinform. 22 (5) (2006)
Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic
Data integration and visualization system for enabling conceptual biology. ISMB (Supplement of Bioinformatics) (2005)
Mikko Katajamaa, Matej Oresic
Processing methods for differential analysis of LC/MS profile data. BMC Bioinform. 6 (2005)
Bruce W. Church, Matej Oresic, David Shalloway
Tracking metastable states to free-energy global minima. Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding (1995)