Daniel Valenzuela

Publication Activity (10 Years)

Years Active: 2011-2021
Publications (10 Years): 12

Top Topics

Space Efficient

Data Compression

Top Venues

Math. Comput. Sci.

Publications

Tuukka Norri, Bastien Cazaux, Saska Dönges, Daniel Valenzuela, Veli Mäkinen
Founder reconstruction enables scalable and seamless pangenomic analysis. Bioinform. 37 (24) (2021)
Dmitry Kosolobov, Daniel Valenzuela
Lempel-Ziv Parsing for Sequences of Blocks. Algorithms 14 (12) (2021)
Dmitry Kosolobov, Daniel Valenzuela, Gonzalo Navarro, Simon J. Puglisi
Lempel-Ziv-Like Parsing in Small Space. Algorithmica 82 (11) (2020)
Altti Ilari Maarala, Ossi Arasalo, Daniel Valenzuela, Keijo Heljanko, Veli Mäkinen
Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark. BigData Congress (2020)
Daniel Valenzuela, Dmitry Kosolobov, Gonzalo Navarro, Simon J. Puglisi
Lempel-Ziv-like Parsing in Small Space. CoRR (2019)
Romeo Rizzi, Massimo Cairo, Veli Mäkinen, Alexandru I. Tomescu, Daniel Valenzuela
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Daniel Valenzuela, Tuukka Norri, Niko Välimäki, Esa Pitkänen, Veli Mäkinen
Towards pan-genome read alignment to improve variation calling. BMC Genom. 19 (S2) (2018)
Veli Mäkinen, Valeria Staneva, Alexandru I. Tomescu, Daniel Valenzuela, Sebastian Wilzbach
Interval scheduling maximizing minimum coverage. Discret. Appl. Math. 225 (2017)
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
Compressed Spaced Suffix Arrays. Math. Comput. Sci. 11 (2) (2017)
Daniel Valenzuela
CHICO: A Compressed Hybrid Index for Repetitive Collections. SEA (2016)
Romeo Rizzi, Massimo Cairo, Veli Mäkinen, Daniel Valenzuela
Diploid Alignment is NP-hard. CoRR (2016)
Travis Gagie, Simon J. Puglisi, Daniel Valenzuela
Analyzing Relative Lempel-Ziv Reference Construction. SPIRE (2016)
Veli Mäkinen, Valeria Staneva, Alexandru I. Tomescu, Daniel Valenzuela
Interval scheduling maximizing minimum coverage. CoRR (2015)
Veli Mäkinen, Daniel Valenzuela
Diploid Alignments and Haplotyping. ISBRA (2015)
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
Compressed Spaced Suffix Arrays. ICABD (2014)
Gonzalo Navarro, Simon J. Puglisi, Daniel Valenzuela
General Document Retrieval in Compact Space. ACM J. Exp. Algorithmics 19 (1) (2014)
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
Compressed Spaced Suffix Arrays. CoRR (2013)
Djamal Belazzougui, Gonzalo Navarro, Daniel Valenzuela
Improved compressed indexes for full-text document retrieval. J. Discrete Algorithms 18 (2013)
Gonzalo Navarro, Daniel Valenzuela
Space-Efficient Top-k Document Retrieval. SEA (2012)
Gonzalo Navarro, Simon J. Puglisi, Daniel Valenzuela
Practical Compressed Document Retrieval. SEA (2011)
Gonzalo Navarro, Daniel Valenzuela
Practical Top-K Document Retrieval in Reduced Space CoRR (2011)