Jing Tang

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 22

Top Topics

Machine Learning Approaches

Traditional Chinese Medicine

Top Venues

Briefings Bioinform.

Publications

Yinyin Wang, Yihang Sui, Jiaqi Yao, Hong Jiang, Qimeng Tian, Yun Tang, Yongyu Ou, Jing Tang, Ninghua Tan
Herb-CMap: a multimodal fusion framework for deciphering the mechanisms of action in traditional Chinese medicine using Suhuang antitussive capsule as a case study. Briefings Bioinform. 25 (5) (2024)
Yi-Ching Tang, Rongbin Li, Jing Tang, W. Jim Zheng, Xiaoqian Jiang
SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations. BMC Bioinform. 25 (1) (2024)
Alina Malyutina, Jing Tang, Alberto Pessia
Package for Dose-Response Data Analysis Using Logistic Functions. J. Stat. Softw. 106 (4) (2023)
Jehad Aldahdooh, Markus Vähä-Koskela, Jing Tang, ZiaurRehman Tanoli
Using BERT to identify drug-target interactions from whole PubMed. BMC Bioinform. 23 (1) (2022)
ZiaurRehman Tanoli, Jehad Aldahdooh, Farhan Alam, Yinyin Wang, Umair Seemab, Maddalena Fratelli, Petr Pavlis, Marian Hajduch, Florence Bietrix, Philip Gribbon, Andrea Zaliani, Matthew D. Hall, Min Shen, Kyle R. Brimacombe, Evgeny Kulesskiy, Saarela Jani, Krister Wennerberg, Markus Vähä-Koskela, Jing Tang
Minimal information for chemosensitivity assays (MICHA): a next-generation pipeline to enable the FAIRification of drug screening experiments. Briefings Bioinform. 23 (1) (2022)
Ali Amiryousefi, Bernardo Williams, Mohieddin Jafari, Jing Tang
The ENDS of assumptions: an online tool for the epistemic non-parametric drug-response scoring. Bioinform. 38 (11) (2022)
Shuyu Zheng, Wenyu Wang, Jehad Aldahdooh, Alina Malyutina, Tolou Shadbahr, ZiaurRehman Tanoli, Alberto Pessia, Jing Tang
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets. Genom. Proteom. Bioinform. 20 (3) (2022)
Jehad Aldahdooh, ZiaurRehman Tanoli, Jing Tang
R-BERT-CNN: Drug-target interactions extraction from biomedical literature. CoRR (2021)
Yejin Kim, Shuyu Zheng, Jing Tang, W. Jim Zheng, Zhao Li, Xiaoqian Jiang
Anticancer drug synergy prediction in understudied tissues using transfer learning. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Liye He, Daria Bulanova, Jaana Oikkonen, Antti Häkkinen, Kaiyang Zhang, Shuyu Zheng, Wenyu Wang, Erdogan Pekcan Erkan, Olli Carpén, Titta Joutsiniemi, Sakari Hietanen, Johanna Hynninen, Kaisa Huhtinen, Sampsa Hautaniemi, Anna Vähärautio, Jing Tang, Krister Wennerberg, Tero Aittokallio
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer. Briefings Bioinform. 22 (6) (2021)
ZiaurRehman Tanoli, Umair Seemab, Andreas Scherer, Krister Wennerberg, Jing Tang, Markus Vähä-Koskela
Exploration of databases and methods supporting drug repurposing: a comprehensive survey. Briefings Bioinform. 22 (2) (2021)
Yinyin Wang, Hongbin Yang, Linxiao Chen, Mohieddin Jafari, Jing Tang
Network-based modeling of herb combinations in traditional Chinese medicine. Briefings Bioinform. 22 (5) (2021)
Bulat Zagidullin, Ziyan Wang, Yuanfang Guan, Esa Pitkänen, Jing Tang
Comparative analysis of molecular fingerprints in prediction of drug combination effects. Briefings Bioinform. 22 (6) (2021)
Shuyu Zheng, Jehad Aldahdooh, Tolou Shadbahr, Yinyin Wang, Dalal Aldahdooh, Jie Bao, Wenyu Wang, Jing Tang
DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Kanglin Hsieh, Yinyin Wang, Luyao Chen, Zhongming Zhao, Sean Savitz, Xiaoqian Jiang, Jing Tang, Yejin Kim
Drug Repurposing for COVID-19 using Graph Neural Network with Genetic, Mechanistic, and Epidemiological Validation. CoRR (2020)
Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang
SynergyFinder: a web application for analyzing drug combination dose-response matrix data. Bioinform. 36 (8) (2020)
Alberto Pessia, Jing Tang
Numerical evaluation of the transition probability of the simple birth-and-death process. CoRR (2019)
Bulat Zagidullin, Jehad Aldahdooh, Shuyu Zheng, Wenyu Wang, Yinyin Wang, Joseph Saad, Alina Malyutina, Mohieddin Jafari, ZiaurRehman Tanoli, Alberto Pessia, Jing Tang
DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Alina Malyutina, Muntasir Mamun Majumder, Wenyu Wang, Alberto Pessia, Caroline Heckman, Jing Tang
Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer. PLoS Comput. Biol. 15 (5) (2019)
Yinyin Wang, Mohieddin Jafari, Yun Tang, Jing Tang
Predicting Meridian in Chinese traditional medicine using machine learning approaches. PLoS Comput. Biol. 15 (11) (2019)
ZiaurRehman Tanoli, Zaid Alam, Markus Vähä-Koskela, Balaguru Ravikumar, Alina Malyutina, Alok Jaiswal, Jing Tang, Krister Wennerberg, Tero Aittokallio
Drug Target Commons 2.0: a community platform for systematic analysis of drug-target interaction profiles. Database J. Biol. Databases Curation 2018 (2018)
Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang
SynergyFinder: a web application for analyzing drug combination dose-response matrix data. Bioinform. 33 (15) (2017)
Liye He, Krister Wennerberg, Tero Aittokallio, Jing Tang
TIMMA-R: an R package for predicting synergistic multi-targeted drug combinations in cancer cell lines or patient-derived samples. Bioinform. 31 (11) (2015)
Paul Blomstedt, Jing Tang, Jie Xiong, Christian Granlund, Jukka Corander
A Bayesian Predictive Model for Clustering Data of Mixed Discrete and Continuous Type. IEEE Trans. Pattern Anal. Mach. Intell. 37 (3) (2015)
Tapio Pahikkala, Antti Airola, Sami Pietilä, Sushil Shakyawar, Agnieszka Szwajda, Jing Tang, Tero Aittokallio
Toward more realistic drug-target interaction predictions. Briefings Bioinform. 16 (2) (2015)
Jing Tang, Agnieszka Szwajda, Sushil Shakyawar, Tao Xu, Petteri Hintsanen, Krister Wennerberg, Tero Aittokallio
Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and Integrative Analysis. J. Chem. Inf. Model. 54 (3) (2014)
Jing Tang, Leena Karhinen, Tao Xu, Agnieszka Szwajda, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio
Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways. PLoS Comput. Biol. 9 (9) (2013)
Jing Tang, William P. Hanage, Christophe Fraser, Jukka Corander
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach. PLoS Comput. Biol. 5 (8) (2009)
Pekka Marttinen, Jing Tang, Bernard De Baets, Peter Dawyndt, Jukka Corander
Bayesian Clustering of Fuzzy Feature Vectors Using a Quasi-Likelihood Approach. IEEE Trans. Pattern Anal. Mach. Intell. 31 (1) (2009)
Jukka Corander, Pekka Marttinen, Jukka Sirén, Jing Tang
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinform. 9 (2008)