Eric Bonnet

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 5

Top Topics

Protein Protein Interactions

Biological Networks

Data Visualization

Top Venues

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Vidisha Singh, George D. Kalliolias, Marek Ostaszewski, Maëva Veyssiere, Eleftherios Pilalis, Piotr Gawron, Alexander Mazein, Eric Bonnet, Elisabeth Petit-Teixeira, Anna Niarakis
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. Database J. Biol. Databases Curation 2020 (2020)
Arnau Montagud, Pauline Traynard, Loredana Martignetti, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev, Laurence Calzone
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. Briefings Bioinform. 20 (4) (2019)
Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. R J. 8 (2) (2016)
Eric Bonnet, Eric Viara, Inna Kuperstein, Laurence Calzone, David P. A. Cohen, Emmanuel Barillot, Andrei Yu. Zinovyev
NaviCell Web Service for network-based data visualization. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Eric Bonnet, Laurence Calzone, Tom Michoel
Integrative Multi-omics Module Network Inference with Lemon-Tree. PLoS Comput. Biol. 11 (2) (2015)
Paola Vera-Licona, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev
OCSANA: optimal combinations of interventions from network analysis. Bioinform. 29 (12) (2013)
Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats. BMC Syst. Biol. 7 (2013)
Eric Bonnet, Ying He, Kenny Billiau, Yves Van de Peer
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinform. 26 (12) (2010)
Eric Bonnet, Tom Michoel, Yves Van de Peer
Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data. Bioinform. 26 (18) (2010)
Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
Validating module network learning algorithms using simulated data. BMC Bioinform. 8 (S-2) (2007)
Philippe Faes, Bram Minnaert, Mark Christiaens, Eric Bonnet, Yvan Saeys, Dirk Stroobandt, Yves Van de Peer
Scalable hardware accelerator for comparing DNA and protein sequences. Infoscale (2006)
Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinform. 20 (17) (2004)