Gautier Stoll

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 3

Top Topics

Biochemical Networks

Stochastic Models

Signaling Pathways

Top Venues

BMC Syst. Biol.

Briefings Bioinform.

Publications

Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik-Sheriff, Cristina Casals-Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Saez-Rodriguez, Aurélien Naldi, Eugenia Oshurko, Ioannis Xenarios, Sylvain Soliman, Claudine Chaouiya, Tomás Helikar, Laurence Calzone
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings Bioinform. 22 (2) (2021)
Gaëlle Letort, Arnau Montagud, Gautier Stoll, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Andrei Yu. Zinovyev, Laurence Calzone
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. Bioinform. 35 (7) (2019)
Gautier Stoll, Barthélémy Caron, Eric Viara, Aurélien Dugourd, Andrei Yu. Zinovyev, Aurélien Naldi, Guido Kroemer, Emmanuel Barillot, Laurence Calzone
MaBoSS 2.0: an environment for stochastic Boolean modeling. Bioinform. 33 (14) (2017)
Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats. BMC Syst. Biol. 7 (2013)
Gautier Stoll, Eric Viara, Emmanuel Barillot, Laurence Calzone
Continuous time boolean modeling for biological signaling: application of Gillespie algorithm. BMC Syst. Biol. 6 (2012)
Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (5) (2011)
Gautier Stoll, Mirko Bischofberger, Jacques Rougemont, Felix Naef
Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico. Biosyst. 102 (1) (2010)
Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, Ovidiu Radulescu, Anne Siegel
Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network. BMC Syst. Biol. 4 (2010)
Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI Workshops (2009)
Gautier Stoll, Jacques Rougemont, Felix Naef
Few crucial links assure checkpoint efficiency in the yeast cell-cycle network. Bioinform. 22 (20) (2006)