Scalable hardware accelerator for comparing DNA and protein sequences.
Philippe FaesBram MinnaertMark ChristiaensEric BonnetYvan SaeysDirk StroobandtYves Van de PeerPublished in: Infoscale (2006)
Keyphrases
- protein sequences
- biological sequences
- nucleotide sequences
- sequence analysis
- computational biology
- sequence databases
- genome sequences
- rna sequences
- coarse grained
- field programmable gate array
- secondary structure
- protein structure
- amino acids
- protein classification
- protein structure and function
- protein structure prediction
- molecular biology
- embedded systems
- amino acid sequences
- hardware implementation
- protein structural
- protein function
- multiple sequence alignment
- multiple alignment
- sequence data
- genetic algorithm
- pairwise
- amino acid composition
- memory efficient
- motif discovery
- dna sequences
- data acquisition
- feature selection