Valentina Boeva

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 8

Top Topics

Image Classification

Fully Unsupervised

Interactive Multimedia

Top Venues

Publications

Andrey Ignatov, Josephine Yates, Valentina Boeva
Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks. CoRR (2024)
Moritz Vandenhirtz, Florian Barkmann, Laura Manduchi, Julia E. Vogt, Valentina Boeva
scTree: Discovering Cellular Hierarchies in the Presence of Batch Effects in scRNA-seq Data. CoRR (2024)
Josephine Yates, Valentina Boeva
Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis. Briefings Bioinform. 23 (2) (2022)
Lélia Polit, Gwenneg Kerdivel, Sebastian Gregoricchio, Michela Esposito, Christel Guillouf, Valentina Boeva
CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes. BMC Bioinform. 22 (1) (2021)
Paul Deveau, Leo Colmet Daage, Derek Oldridge, Virginie Bernard, Angela Bellini, Mathieu Chicard, Nathalie Clement, Eve Lapouble, Valerie Combaret, Anne Boland, Vincent Meyer, Jean-Francois Deleuze, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Olivier Delattre, John M. Maris, Gudrun Schleiermacher, Valentina Boeva
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction. Bioinform. 34 (11) (2018)
Karel Brinda, Valentina Boeva, Gregory Kucherov
RNF: a general framework to evaluate NGS read mappers. Bioinform. 32 (1) (2016)
Daria Iakovishina, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Mireille Régnier, Valentina Boeva
SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability. Bioinform. 32 (7) (2016)
Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. R J. 8 (2) (2016)
Valentina Boeva, Tatiana G. Popova, Maxime Lienard, Sebastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. Bioinform. 30 (24) (2014)
Toby Dylan Hocking, Valentina Boeva, Guillem Rigaill, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Wilfrid Richer, Franck Bourdeaut, Miyuki Suguro, Masao Seto, Francis R. Bach, Jean-Philippe Vert
SegAnnDB: interactive Web-based genomic segmentation. Bioinform. 30 (11) (2014)
Haitham Ashoor, Aurélie Hérault, Aurélie Kamoun, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot, Valentina Boeva
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. Bioinform. 29 (23) (2013)
Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis R. Bach, Jean-Philippe Vert
Learning smoothing models of copy number profiles using breakpoint annotations. BMC Bioinform. 14 (2013)
Valentina Boeva, Alban Lermine, Camille Barette, Christel Guillouf, Emmanuel Barillot
Nebula - a web-server for advanced ChIP-seq data analysis. Bioinform. 28 (19) (2012)
Valentina Boeva, Tatiana G. Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. Bioinform. 28 (3) (2012)
Valentina Boeva, Andrei Yu. Zinovyev, Kevin Bleakley, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization. Bioinform. 27 (2) (2011)
Bruno Zeitouni, Valentina Boeva, Isabelle Janoueix-Lerosey, Sophie Loeillet, Patricia Legoix-né, Alain Nicolas, Olivier Delattre, Emmanuel Barillot
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. Bioinform. 26 (15) (2010)
Ivan V. Kulakovskiy, Valentina Boeva, Alexander V. Favorov, Vsevolod J. Makeev
Deep and wide digging for binding motifs in ChIP-Seq data. Bioinform. 26 (20) (2010)
Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A. Roytberg, Vsevolod J. Makeev
-regulatory modules. Algorithms Mol. Biol. 2 (2007)
Valentina Boeva, Mireille Régnier, Dmitri A. Papatsenko, Vsevolod J. Makeev
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression. Bioinform. 22 (6) (2006)
Valentina Boeva, Julien Clément, Mireille Régnier, Mathias Vandenbogaert
Assessing the Significance of Sets of Words. CPM (2005)