Chien-Yu Chen

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 11

Top Topics

Automatic Model Selection

Detection Algorithm

Protein Function

Top Venues

Nucleic Acids Res.

Publications

Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien-Yu Chen, Geir Kjetil Sandve, Tatiana Belova, Marieke L. Kuijjer
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data. CoRR (2024)
Hong-Sheng Lai, Chien-Yu Chen
Evaluating the Performance of Protein Structure Prediction in Detecting Structural Changes of Pathogenic Nonsynonymous Single Nucleotide Variants. BIOSTEC (1) (2024)
Peng-Hsuan Li, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai, Hsueh-Fen Juan, Chien-Yu Chen, Jia-Hsin Huang
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature. Nucleic Acids Res. 50 (W1) (2022)
Jun-Liang Lin, Tsung-Ting Hsieh, Yi-An Tung, Xuan-Jun Chen, Yu-Chun Hsiao, Chia-Lin Yang, Tyng-Luh Liu, Chien-Yu Chen
ezGeno: an automatic model selection package for genomic data analysis. Bioinform. 38 (1) (2021)
Ting-Fu Chen, Yu-Chuan Chang, Yi Hsiao, Ko-Han Lee, Yu-Chun Hsiao, Yu-Hsiang Lin, Yi-Chin Ethan Tu, Hsuan-Cheng Huang, Chien-Yu Chen, Hsueh-Fen Juan
DockCoV2: a drug database against SARS-CoV-2. Nucleic Acids Res. 49 (Database-Issue) (2021)
Wen-Tse Yang, Dong-Chi Wu, Jen-Feng Liu, Jin-Bon Hong, June-Tai Wu, Pei-Lung Chen, Chien-Yu Chen
Evaluation of using WGS/WES to characterize ACMG actionable genes in genetic testing reports. BIBM (2021)
Yu-Cheng Li, Mao-Jan Lin, Xiao-Xuan Huang, Chien-Yu Chen, Yi-Chang Lu
Comprehensive Study of Keywords for Sequence-Based Automatic Annotation of Protein Functions. BIBE (2020)
Yu-Chuan Chang, June-Tai Wu, Ming-Yi Hong, Yi-An Tung, Ping-Han Hsieh, Sook Wah Yee, Kathleen M. Giacomini, Yen-Jen Oyang, Chien-Yu Chen
GenEpi: gene-based epistasis discovery using machine learning. BMC Bioinform. 21 (1) (2020)
Kai-Wen Chuang, Chien-Yu Chen
Predicting Pathogenic Non-coding Variants on Imbalanced Data Set using Cluster Ensemble Sampling. BIBE (2019)
Chien-Yu Chen, Jian-Jiun Ding, Hung-Wei Hsu, Yih-Cherng Lee
Advanced Orientation Robust Face Detection Algorithm Using Prominent Features and Hybrid Learning Techniques. VCIP (2018)
Chien-Yu Chen, Jian-Jiun Ding, Chen-Wei Huang
Advanced Ear Detection Algorithm Using Faster R-CNN, Refocus Filters, and the Gradient Map. DSL (2018)
Chih-Kang Lin, Chien-Yu Chen
PiDNA: predicting protein-DNA interactions with structural models. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen, Darby Tien-Hao Chang
DBD2BS: connecting a DNA-binding protein with its binding sites. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Mei-Ju May Chen, Lih-Ching Chou, Tsung-Ting Hsieh, Ding-Dar Lee, Kai-Wei Liu, Chi-Yuan Yu, Yen-Jen Oyang, Huai-Kuang Tsai, Chien-Yu Chen
. Bioinform. 28 (5) (2012)
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu
WildSpan: mining structured motifs from protein sequences. Algorithms Mol. Biol. 6 (2011)
Chien-Chih Wang, Chien-Yu Chen
Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties. BIBM (2010)
Yi-An Tung, Yu-Ying Chang, Rong-Nan Huang, Chien-Yu Chen
Sequence composition analysis on arsenic-binding proteins in human cells. BIBM Workshops (2010)
Li-Yu Daisy Liu, Chien-Yu Chen, Mei-Ju May Chen, Ming-Shian Tsai, Cho-Han S. Lee, Tzu L. Phang, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Huang-Chun Lien, Shih-Ming Jung, Yi-Shing Lin, King-Jen Chang, Fon-Jou Hsieh
Statistical identification of gene association by CID in application of constructing ER regulatory network. BMC Bioinform. 10 (2009)
Darby Tien-Hao Chang, Ting-Ying Chien, Chien-Yu Chen
seeMotif: exploring and visualizing sequence motifs in 3D structures. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Hsi-Che Liu, Chien-Yu Chen, Yu-Ting Liu, Cheng-Bang Chu, Der-Cherng Liang, Lee-Yung Shih, Chih-Jen Lin
Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods. J. Biomed. Informatics 41 (4) (2008)
Ting-Ying Chien, Darby Tien-Hao Chang, Chien-Yu Chen, Yi-Zhong Weng, Chen-Ming Hsu
E1DS: catalytic site prediction based on 1D signatures of concurrent conservation. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih-Chang Huang, Min-Hung Laio, Chien-Chieh Lin, Tzung-Lin Wu
Identification of hot regions in protein-protein interactions by sequential pattern mining. BMC Bioinform. 8 (S-5) (2007)
Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Yen Ou, Yen-Jen Oyang
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. BIRD (2007)
Yen-Jen Oyang, Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, Chien-Yu Chen
Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator. MLMTA (2007)
Chung-Tsai Su, Chien-Yu Chen, Chen-Ming Hsu
iPDA: integrated protein disorder analyzer. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Tsun-Chen Lin, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen
Pattern classification in DNA microarray data of multiple tumor types. Pattern Recognit. 39 (12) (2006)
Chien-Yu Chen, Wen-Chin Chung, Chung-Tsai Su
Exploiting homogeneity in protein sequence clusters for construction of protein family hierarchies. Pattern Recognit. 39 (12) (2006)
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu
MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Chung-Tsai Su, Chien-Yu Chen, Yu-Yen Ou
Protein disorder prediction by condensed PSSM considering propensity for order or disorder. BMC Bioinform. 7 (2006)
Chen-Ming Hsu, Chien-Yu Chen, Ching-Chi Hsu, Baw-Jhiune Liu
Efficient Discovery of Structural Motifs from Protein Sequences with Combination of Flexible Intra- and Inter-block Gap Constraints. PAKDD (2006)
Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang
A statistics-based approach to control the quality of subclusters in incremental gravitational clustering. Pattern Recognit. 38 (12) (2005)
Tsun-Chen Lin, Ru-Sheng Liu, Shu-Yuan Chen, Chen-Chung Liu, Chien-Yu Chen
Genetic algorithms and silhouette measures applied to microarray data classification. APBC (2005)
Yen-Jen Oyang, Shien-Ching Hwang, Yu-Yen Ou, Chien-Yu Chen, Zhi-Wei Chen
Data classification with radial basis function networks based on a novel kernel density estimation algorithm. IEEE Trans. Neural Networks 16 (1) (2005)
Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang
Analysis and summarization of correlations in data cubes and its application in microarray data analysis. Intell. Data Anal. 9 (1) (2005)
Ssu-Hua Huang, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen
Prediction of Outer Membrane Proteins by Support Vector Machines Using Combinations of Gapped Amino Acid Pair Compositions. BIBE (2005)
Chien-Yu Chen, Yu-Chuan Kuo, Chiou-Shann Fuh
Image Reconstruction With Improved Super-Resolution Algorithm. Int. J. Pattern Recognit. Artif. Intell. 18 (8) (2004)
Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan
Incremental generation of summarized clustering hierarchy for protein family analysis. Bioinform. 20 (16) (2004)
Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. BIBE (2004)
Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Ying-Wen Bai, Wen-Yang Chu, Chien-Yu Chen, Yi-Ting Lee, Yi-Ching Tsai, Cheng-Hung Tsai
The Combination of Kaiser Window and Moving Average for the Low-Pass Filtering of the Remote ECG Signals. CBMS (2004)
Michael O. Ball, Chien-Yu Chen, Zhen-Ying Zhao
Material compatibility constraints for make-to-order production planning. Oper. Res. Lett. 31 (3) (2003)
Chien-Yu Chen, Hsueh-Fen Juan, Po-Jen Hsiao, Shui-Tein Chen, Hsiang-Wen Tseng, Yen-Jen Oyang
Design of an incremental clustering package for protein function and family analysis. ISMSE (2003)
Yu-Yen Ou, Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang
Expediting model selection for Support Vector Machines based on data reduction. SMC (2003)
Yen-Jen Oyang, Darby Tien-Hao Chang, Chien-Yu Chen, Shien-Ching Hwang
Expediting protein structural analysis with an efficient kernel density estimation algorithm. ISMSE (2003)
Chien-Yu Chen, Iwan M. Duursma
. IEEE Trans. Inf. Theory 49 (5) (2003)
Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang
Analysis and summarization of correlations in data cubes. Data Mining and Knowledge Discovery: Theory, Tools, and Technology (2002)
Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang
An Incremental Hierarchical Data Clustering Algorithm Based on Gravity Theory. PAKDD (2002)
Yen-Jen Oyang, Chien-Yu Chen, Tsui-Wei Yang
A Study on the Hierarchical Data Clustering Algorithm Based on Gravity Theory. PKDD (2001)
Chien-Yu Chen, Zhen-Ying Zhao, Michael O. Ball
Quantity and Due Date Quoting Available to Promise. Inf. Syst. Frontiers 3 (4) (2001)
Chien-Yu Chen, Zhong-Lan Yang, Tu-Chih Wang, Liang-Gee Chen
A Programmable Parallel VLSI Architecture for 2-D Discrete Wavelet Transform. J. VLSI Signal Process. 28 (3) (2001)
Chien-Yu Chen, Zhong-Lan Yang, Tu-Chih Wang, Liang-Gee Chen
A programmable VLSI architecture for 2-D discrete wavelet transform. ISCAS (2000)