Andrey Alekseenko

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 11

Top Topics

Protein Sequences

Grand Challenges

Sampling Algorithm

Top Venues

J. Comput. Aided Mol. Des.

Publications

Andrey Alekseenko, Szilárd Páll, Erik Lindahl
GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability. CoRR (2024)
Andrey Alekseenko, Szilárd Páll
Comparing the Performance of SYCL Runtimes for Molecular Dynamics Applications. IWOCL (2023)
Andrey Alekseenko, Szilárd Páll, Erik Lindahl
Experiences With Adding SYCL Support to GROMACS. IWOCL (2021)
Sergei Kotelnikov, Andrey Alekseenko, Cong Liu, Mikhail Ignatov, Dzmitry Padhorny, Emiliano Brini, Mark Lukin, Evangelos A. Coutsias, Ken A. Dill, Dima Kozakov
Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. J. Comput. Aided Mol. Des. 34 (2) (2020)
Mikhail Ignatov, Cong Liu, Andrey Alekseenko, Zhuyezi Sun, Dzmitry Padhorny, Sergei Kotelnikov, Andrey M. Kazennov, Ivan Grebenkin, Yaroslav Kholodov, Istvan Kolosvari, Alberto Pérez, Ken A. Dill, Dima Kozakov
Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge. J. Comput. Aided Mol. Des. 33 (1) (2019)
Andrey Alekseenko, Hien Q. Dang, Gaurav Bansal, Javier J. Sánchez Medina, Chiyomi Miyajima, Takatsugu Hirayama, Kazuya Takeda, Ichiro Ide
ITS+DM Hackathon (ITSC 2017): Lane Departure Prediction With Naturalistic Driving Data. IEEE Intell. Transp. Syst. Mag. 11 (4) (2019)
Sergey Verentsov, Emil Magerramov, Vlad Vinogradov, Ramil Gizatullin, Andrey Alekseenko, Yaroslav Kholodov, Evgeniy Nikolskiy
Bayesian Framework for Vehicle Localization Using Crowdsourced Data. Intelligent Vehicles Symposium (2018)
Dzmitry Padhorny, David R. Hall, Hanieh Mirzaei, Artem B. Mamonov, Mohammad Moghadasi, Andrey Alekseenko, Dmitri Beglov, Dima Kozakov
Protein-ligand docking using FFT based sampling: D3R case study. J. Comput. Aided Mol. Des. 32 (1) (2018)
Andrey Alekseenko, Yaroslav Kholodov, Aleksander Kholodov, Yuri V. Chekhovich, Vsevolod Starozhilets
Adaptive traffic light control on highway entrances. ITSC (2017)
Sergey Verentsov, Emil Magerramov, Vlad Vinogradov, Ramil Gizatullin, Andrey Alekseenko, Yaroslav Kholodov, Evgeniy Nikolskiy
Bayesian Localization for Autonomous Vehicle using Sensor Fusion and Traffic Signs. ICRAI (2017)
Andrey Alekseenko, Olga Kononova, Yaroslav Kholodov, Kenneth A. Marx, Valeri Barsegov
SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies. J. Comput. Chem. 37 (17) (2016)