Evangelos A. Coutsias

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 10

Top Topics

Secondary Structure

Inverse Kinematics

Numerically Stable

Intersection Points

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Math. Comput. Simul.

Publications

Xin Cao, Mikhail Ignatov, George Jones, Sara N. Pollock, Evangelos A. Coutsias, Dima Kozakov
Numerically stable algorithm for Inverse Kinematics of 6R problem and its applications to macrocycles. BCB (2023)
Mosavverul Hassan, Evangelos A. Coutsias
Kinematic Reconstruction of Cyclic Peptides and Protein Backbones from Partial Data. J. Chem. Inf. Model. 61 (10) (2021)
Mosavverul Hassan, Evangelos A. Coutsias
Protein secondary structure motifs: A kinematic construction. J. Comput. Chem. 42 (5) (2021)
Sergei Kotelnikov, Andrey Alekseenko, Cong Liu, Mikhail Ignatov, Dzmitry Padhorny, Emiliano Brini, Mark Lukin, Evangelos A. Coutsias, Ken A. Dill, Dima Kozakov
Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. J. Comput. Aided Mol. Des. 34 (2) (2020)
Evangelos A. Coutsias, Michael J. Wester
RMSD and Symmetry. J. Comput. Chem. 40 (15) (2019)
Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias
Laguerre-Intersection Method for Implicit Solvation. Int. J. Comput. Geom. Appl. 28 (1) (2018)
Kevin Hauser, Yiqing He, Miguel Garcia-Diaz, Carlos Simmerling, Evangelos A. Coutsias
Characterization of Biomolecular Helices and Their Complementarity Using Geometric Analysis. J. Chem. Inf. Model. 57 (4) (2017)
Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias
Laguerre-Intersection Method for Implicit Solvation. CoRR (2017)
Robert H. Lewis, Evangelos A. Coutsias
Flexibility of Bricard's linkages and other structures via resultants and computer algebra. Math. Comput. Simul. 125 (2016)
Gaurav Bhardwaj, Vikram Khipple Mulligan, Christopher D. Bahl, Jason M. Gilmore, Peta J. Harvey, Olivier Cheneval, Garry W. Buchko, Surya V. S. R. K. Pulavarti, Quentin Kaas, Alexander Eletsky, Po-Ssu Huang, William A. Johnsen, Per Greisen, Gabriel J. Rocklin, Yifan Song, Thomas W. Linsky, Andrew M. Watkins, Stephen A. Rettie, Xianzhong Xu, Lauren P. Carter, Richard Bonneau, James M. Olson, Evangelos A. Coutsias, Colin E. Correnti, Thomas Szyperski, David J. Craik, David Baker
design of hyperstable constrained peptides. Nat. 538 (7625) (2016)
Evangelos A. Coutsias
Bricard flexible octahedra and the canonical cyclohexane. ACM Commun. Comput. Algebra 49 (2) (2015)
Junsu Ko, Dongseon Lee, Hahnbeom Park, Evangelos A. Coutsias, Julian Lee, Chaok Seok
The FALC-Loop web server for protein loop modeling. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Sara N. Pollock, Evangelos A. Coutsias, Michael J. Wester, Tudor I. Oprea
Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings. J. Chem. Inf. Model. 48 (7) (2008)
Michael J. Wester, Sara N. Pollock, Evangelos A. Coutsias, Tharun Kumar Allu, Sorel Muresan, Tudor I. Oprea
Scaffold Topologies. 2. Analysis of Chemical Databases. J. Chem. Inf. Model. 48 (7) (2008)
Robert H. Lewis, Evangelos A. Coutsias
Algorithmic Search for Flexibility Using Resultants of Polynomial Systems. Automated Deduction in Geometry (2006)
Gregory von Winckel, Sanjay Krishna, Evangelos A. Coutsias
Spectral element modeling of semiconductor heterostructures. Math. Comput. Model. 43 (5-6) (2006)
Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller. J. Comput. Chem. 26 (15) (2005)
Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
Using quaternions to calculate RMSD. J. Comput. Chem. 25 (15) (2004)
Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson, Ken A. Dill
A kinematic view of loop closure. J. Comput. Chem. 25 (4) (2004)
David J. Torres, Evangelos A. Coutsias
Pseudospectral Solution of the Two-Dimensional Navier-Stokes Equations in a Disk. SIAM J. Sci. Comput. 21 (1) (1999)
Evangelos A. Coutsias, Thomas M. Hagstrom, David J. Torres
An efficient spectral method for ordinary differential equations with rational function coefficients. Math. Comput. 65 (214) (1996)