Artem B. Mamonov

Publication Activity (10 Years)

Years Active: 2009-2018
Publications (10 Years): 4

Top Topics

Mass Spectrometry

Protein Sequences

Message Passing

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

Publications

Dzmitry Padhorny, David R. Hall, Hanieh Mirzaei, Artem B. Mamonov, Mohammad Moghadasi, Andrey Alekseenko, Dmitri Beglov, Dima Kozakov
Protein-ligand docking using FFT based sampling: D3R case study. J. Comput. Aided Mol. Des. 32 (1) (2018)
Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov
Focused grid-based resampling for protein docking and mapping. J. Comput. Chem. 37 (11) (2016)
Bing Xia, Artem B. Mamonov, Seppe Leysen, Karen N. Allen, Sergei V. Strelkov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov
Accounting for observed small angle X-ray scattering profile in the protein-protein docking server cluspro. J. Comput. Chem. 36 (20) (2015)
Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov
The Impact of Side-Chain Packing on Protein Docking Refinement. J. Chem. Inf. Model. 55 (4) (2015)
Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
A message passing approach to Side Chain Positioning with applications in protein docking refinement. CDC (2012)
Steven Lettieri, Artem B. Mamonov, Daniel M. Zuckerman
Extending fragment-based free energy calculations with library monte carlo simulation: Annealing in interaction space. J. Comput. Chem. 32 (6) (2011)
Artem B. Mamonov, Xin Zhang, Daniel M. Zuckerman
Rapid sampling of all-atom peptides using a library-based polymer-growth approach. J. Comput. Chem. 32 (3) (2011)
Xin Zhang, Artem B. Mamonov, Daniel M. Zuckerman
Absolute free energies estimated by combining precalculated molecular fragment libraries. J. Comput. Chem. 30 (11) (2009)