Pirooz Vakili

Publication Activity (10 Years)

Years Active: 1991-2023
Publications (10 Years): 2

Top Topics

Global Optimization

Protein Structure

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Frontiers Bioinform.

Publications

Nasser Hashemi, Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda, Dima Kozakov
Improved prediction of MHC-peptide binding using protein language models. Frontiers Bioinform. 3 (2023)
Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov
Focused grid-based resampling for protein docking and mapping. J. Comput. Chem. 37 (11) (2016)
Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov
The Impact of Side-Chain Packing on Protein Docking Refinement. J. Chem. Inf. Model. 55 (4) (2015)
Feng Nan, Mohammad Moghadasi, Pirooz Vakili, Sandor Vajda, Dima Kozakov, Ioannis Ch. Paschalidis
A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking. CDC (2014)
Pirooz Vakili, Hanieh Mirzaei, Shahrooz Zarbafian, Ioannis Ch. Paschalidis, Dima Kozakov, Sandor Vajda
Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach. CDC (2014)
Mohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
A new distributed algorithm for side-chain positioning in the process of protein docking. CDC (2013)
Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili
Flexible refinement of protein-ligand docking on manifolds. CDC (2013)
Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili
A new approach to rigid body minimization with application to molecular docking. CDC (2012)
Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
A message passing approach to Side Chain Positioning with applications in protein docking refinement. CDC (2012)
Tarik Borogovac, Na Sun, Pirooz Vakili
Control variates for sensitivity estimation. WSC (2010)
Xiaojin Tang, Pirooz Vakili
Importance sampling for parametric estimation. WSC (2010)
Tarik Borogovac, Francis J. Alexander, Pirooz Vakili
A Control Variate Approach for Improving Efficiency of Ensemble Monte Carlo CoRR (2008)
Yang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda
Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes. PLoS Comput. Biol. 4 (10) (2008)
Tarik Borogovac, Pirooz Vakili
Control variate technique: A constructive approach. WSC (2008)
Gang Zhao, Pirooz Vakili
Monotonicity and stratification. WSC (2008)
Gang Zhao, Tarik Borogovac, Pirooz Vakili
Efficient estimation of option price and price sensitivities via structured database Monte Carlo (SDMC). WSC (2007)
Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda
SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking. IEEE Trans. Autom. Control. 52 (4) (2007)
Yang Shen, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking. CDC (2007)
Gang Zhao, Yakun Zhou, Pirooz Vakili
A new efficient simulation strategy for pricing path-dependent options. WSC (2006)
Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda
Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels. EMBC (2006)
Leonardo P. Santiago, Pirooz Vakili
On the Value of Flexibility in R&D Projects. Manag. Sci. 51 (8) (2005)
Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, Pirooz Vakili
A Semi-Definite programming-based Underestimation method for global optimization in molecular docking. CDC/ECC (2005)
Christos G. Cassandras, Meimei Deng, Jian-Qiang Hu, Christos G. Panayiotou, Pirooz Vakili, Chenming Zhao
Development of a discrete event dynamic systems curriculum using a Web-based "real-time" simulated factory. ACC (2004)
Jian-Qiang Hu, Pirooz Vakili, Lei Huang
Capacity and Production Managment in a Single Product Manufacturing System. Ann. Oper. Res. 125 (1-4) (2004)
Leonardo P. Santiago, Pirooz Vakili
Value of flexibility in a finite horizon decision process. CDC (2004)
Yanfeng Wang, James R. Perkins, Pirooz Vakili, Anil Khurana
Optimal allocation of heterogeneous resources: a control-theoretic approach. CDC (2001)
Simon Streltsov, Pirooz Vakili
A Non-myopic Utility Function for Statistical Global Optimization Algorithms. J. Glob. Optim. 14 (3) (1999)
David A. Castañón, Simon Streltsov, Pirooz Vakili
Optimality of index policies for a sequential sampling problem. IEEE Trans. Autom. Control. 44 (1) (1999)
Simon Streltsov, Pirooz Vakili
Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains. Discret. Event Dyn. Syst. 6 (2) (1996)
Guo-Xiang Yu, Pirooz Vakili
Periodic and chaotic dynamics of a switched-server system under corridor policies. IEEE Trans. Autom. Control. 41 (4) (1996)
Pirooz Vakili
Variance Reduction for Discrete Event Systems Driven by Poisson Processes. WSC (1995)
Jian-Qiang Hu, Pirooz Vakili, Guo-Xiang Yu
Optimality of hedging point policies in the production control of failure prone manufacturing systems. IEEE Trans. Autom. Control. 39 (9) (1994)
Pirooz Vakili, Guo-Xiang Yu
Uniformization based sensitivity estimation for a class of discrete-event systems. Discret. Event Dyn. Syst. 4 (2) (1994)
Simon Streltsov, Pirooz Vakili
Parallel replicated simulation of Markov chains: implementation and variance reduction. WSC (1993)
Yu-Chi Ho, R. S. Sreenivas, Pirooz Vakili
Ordinal optimization of DEDS. Discret. Event Dyn. Syst. 2 (1) (1992)
Paul Glasserman, Pirooz Vakili
Correlation of Markov Chains Simulated in Parallel. WSC (1992)
Pirooz Vakili
Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different Perspective. ACM Trans. Model. Comput. Simul. 2 (3) (1992)
Pirooz Vakili
Using a standard clock technique for efficient simulation. Oper. Res. Lett. 10 (8) (1991)