Xiaohua Hu

ORCID

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 104

Top Venues

BIBM

IEEE BigData

IEEE ACM Trans. Comput. Biol. Bioinform.

CoRR

Publications

Weizhong Zhao, Junze Wu, Shujie Luo, Xingpeng Jiang, Tingting He, Xiaohua Hu
Subtask-Aware Representation Learning for Predicting Antibiotic Resistance Gene Properties via Gating-Controlled Mechanism. IEEE J. Biomed. Health Informatics 28 (7) (2024)
Xintong Zhao, Kyle Langlois, Jacob Furst, Yuan An, Xiaohua Hu, Diego A. Gómez-Gualdrón, Fernando J. Uribe-Romo, Jane Greenberg
Research evolution of metal organic frameworks: A scientometric approach with human-in-the-loop. J. Data Inf. Sci. 9 (3) (2024)
Weizhong Zhao, Xueling Yuan, Xianjun Shen, Xingpeng Jiang, Chuan Shi, Tingting He, Xiaohua Hu
Improving drug-drug interactions prediction with interpretability via meta-path-based information fusion. Briefings Bioinform. 24 (2) (2023)
Yuan An, Jane Greenberg, Alexander Kalinowski, Xintong Zhao, Xiaohua Hu, Fernando J. Uribe-Romo, Kyle Langlois, Jacob Furst, Diego A. Gómez-Gualdrón
Knowledge Graph Question Answering for Materials Science (KGQA4MAT): Developing Natural Language Interface for Metal-Organic Frameworks Knowledge Graph (MOF-KG). CoRR (2023)
Jiamin Chen, Jianliang Gao, Tengfei Lyu, Oloulade Babatounde Moctard, Xiaohua Hu
AutoMSR: Auto Molecular Structure Representation Learning for Multi-label Metabolic Pathway Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Zheng Chen, Ziyan Jiang, Fan Yang, Zhankui He, Yupeng Hou, Eunah Cho, Julian J. McAuley, Aram Galstyan, Xiaohua Hu, Jie Yang
The First Workshop on Personalized Generative AI @ CIKM 2023: Personalization Meets Large Language Models. CIKM (2023)
Weizhong Zhao, Wenjie Yao, Xingpeng Jiang, Tingting He, Chuan Shi, Xiaohua Hu
An Explainable Framework for Predicting Drug-Side Effect Associations via Meta-Path-Based Feature Learning in Heterogeneous Information Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Xintong Zhao, Kyle Langlois, Jacob Furst, Scott McClellan, Xiaohua Hu, Yuan An, Diego A. Gómez-Gualdrón, Fernando J. Uribe-Romo, Jane Greenberg
Metadata for Scientific Experiment Reporting: A Case Study in Metal-Organic Frameworks. CoRR (2023)
Rob Fleur, Addy Ireland, Xintong Zhao, Scott McClellan, Eric Paltoo, Tianyu Su, Channyung Lee, Yuan An, Xiaohua Hu, Elif Ertekin, Jane Greenberg
Investigating Data Reusability in Density Functional Theory Studies. BigData (2023)
Xintong Zhao, Kyle Langlois, Jacob Furst, Scott McClellan, Rob Fleur, Yuan An, Xiaohua Hu, Fernando J. Uribe-Romo, Diego A. Gómez-Gualdrón, Jane Greenberg
When LLM Meets Material Science: An Investigation on MOF Synthesis Labeling. BigData (2023)
Yuan An, Jane Greenberg, Xiaohua Hu, Alexander Kalinowski, Xiao Fang, Xintong Zhao, Scott McClellan, Fernando J. Uribe-Romo, Kyle Langlois, Jacob Furst, Diego A. Gómez-Gualdrón, Fernando Fajardo-Rojas, Katherine Ardila, Semion Saikin, Corey A. Harper, Ron Daniel Jr.
Exploring Pre-Trained Language Models to Build Knowledge Graph for Metal-Organic Frameworks (MOFs). Big Data (2022)
Jiamin Chen, Zhenpeng Wu, Jianliang Gao, Xiaohua Hu
Glycan Immunogenicity Prediction with Efficient Automatic Graph Neural Network. BIBM (2022)
Yue Zhang, Wanying Ding, Ran Xu, Xiaohua Hu
Visual Emotion Representation Learning via Emotion-Aware Pre-training. IJCAI (2022)
Yuan An, Jane Greenberg, Xintong Zhao, Xiaohua Hu, Scott McClellan, Alexander Kalinowski, Fernando J. Uribe-Romo, Kyle Langlois, Jacob Furst, Diego A. Gómez-Gualdrón, Fernando Fajardo-Rojas, Katherine Ardila
Building Open Knowledge Graph for Metal-Organic Frameworks (MOF-KG): Challenges and Case Studies. CoRR (2022)
Jane Greenberg, Scott McClellan, Xintong Zhao, Elijah J. Kellner, David Venator, Haoran Zhao, Jiacheng Shen, Xiaohua Hu, Yuan An
Materials Science Ontology Design with an Analytico-Synthetic Facet Analysis Framework. MTSR (2022)
Weizhong Zhao, Shujie Luo, Haifang Wu, Xingpeng Jiang, Tingting He, Xiaohua Hu
A multi-label learning framework for predicting antibiotic resistance genes via dual-view modeling. Briefings Bioinform. 23 (3) (2022)
Jane Greenberg, Scott McClellan, Xintong Zhao, Elijah J. Kellner, David Venator, Haoran Zhao, Jiacheng Shen, Xiaohua Hu, Yuan An
Materials Science Ontology Design with an Analytico-Synthetic Facet Analysis Framework. CoRR (2022)
Xintong Zhao, Jane Greenberg, Vanessa Meschke, Eric Toberer, Xiaohua Hu
An exploratory analysis: extracting materials science knowledge from unstructured scholarly data. Electron. Libr. 39 (3) (2021)
Yue Zhang, Wanying Ding, Ran Xu, Xiaohua Hu
Towards Explainable Visual Emotion Understanding. IEEE BigData (2021)
Jianliang Gao, Ling Tian, Tengfei Lv, Jianxin Wang, Bo Song, Xiaohua Hu
Protein2Vec: Aligning Multiple PPI Networks with Representation Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Xintong Zhao, Steven Lopez, Semion Saikin, Xiaohua Hu, Jane Greenberg
Text to Insight: Accelerating Organic Materials Knowledge Extraction via Deep Learning. ASIST (2021)
Jiamin Chen, Jianliang Gao, Tengfei Lyu, Oloulade Babatounde Moctard, Xiaohua Hu
Multi-label Metabolic Pathway Prediction with Auto Molecular Structure Representation Learning. BIBM (2021)
Xintong Zhao, Steven Lopez, Semion Saikin, Xiaohua Hu, Jane Greenberg
Text to Insight: Accelerating Organic Materials Knowledge Extraction via Deep Learning. CoRR (2021)
Xintong Zhao, Jane Greenberg, Scott McClellan, Yong-Jie Hu, Steven Lopez, Semion Saikin, Xiaohua Hu, Yuan An
Knowledge Graph-Empowered Materials Discovery. IEEE BigData (2021)
Weizhong Zhao, Dandan Fang, Jinyong Zhang, Yao Zhao, Xiaowei Xu, Xingpeng Jiang, Xiaohua Hu, Tingting He
An effective framework for semistructured document classification via hierarchical attention model. Int. J. Intell. Syst. 36 (9) (2021)
Jianliang Gao, Ling Tian, Yuxin Liu, Jianxin Wang, Zhao Li, Xiaohua Hu
Multi-task Based Few-Shot Learning for Disease Similarity Measurement. BIBM (2020)
Le Ou-Yang, Xiao-Fei Zhang, Xiaohua Hu, Hong Yan
Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Jinli Zhang, Zongli Jiang, Yongping Du, Tong Li, Yida Wang, Xiaohua Hu
Hierarchy construction and classification of heterogeneous information networks based on RSDAEf. Data Knowl. Eng. 127 (2020)
Jinli Zhang, Zongli Jiang, Zheng Chen, Xiaohua Hu
WMGCN: Weighted Meta-Graph Based Graph Convolutional Networks for Representation Learning in Heterogeneous Networks. IEEE Access 8 (2020)
Yuanyuan Ma, Xiaohua Hu, Tingting He, Xingpeng Jiang
Clustering and Integrating of Heterogeneous Microbiome Data by Joint Symmetric Nonnegative Matrix Factorization with Laplacian Regularization. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Rui Yuan, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate $t$t-Distribution. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Zheng Chen, Xinli Yu, Yuan Ling, Xiaohua Hu
Neural Stochastic Block Model & Scalable Community-Based Graph Learning. CoRR (2020)
Dandan Fang, Jinyong Zhang, Weizhong Zhao, Xiaowei Xu, Xingpeng Jiang, Xiaohua Hu, Tingting He
Hierarchical-Document-Structure-Aware Attention with Adaptive Cost Sensitive Learning for Biomedical Document Classification. IEEE BigData (2019)
Lei Chen, Hong Song, Chi Wang, Yutao Cui, Jian Yang, Xiaohua Hu, Le Zhang
Liver tumor segmentation in CT volumes using an adversarial densely connected network. BMC Bioinform. (16) (2019)
Huiru Zeng, Xiaohua Hu, Leiting Chen, Chuan Zhou, Yang Wen
Weakly Supervised Learning of Recurrent Residual ConvNets for Pancreas Segmentation in CT Scans. BIBM (2019)
Jinli Zhang, Xiaohua Hu, Zongli Jiang, Bo Song, Wei Quan, Zheng Chen
Predicting Disease-related RNA Associations based on Graph Convolutional Attention Network. BIBM (2019)
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan
DiffNetFDR: differential network analysis with false discovery rate control. Bioinform. 35 (17) (2019)
Xinli Yu, Zheng Chen, Wei-Shih Yang, Xiaohua Hu, Erjia Yan
Large-Scale Joint Topic, Sentiment & User Preference Analysis for Online Reviews. CoRR (2019)
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xing-Ming Zhao, Xiaohua Hu, Hong Yan
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning. Bioinform. 35 (22) (2019)
Jia-Juan Tu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Ling Tian, Jianliang Gao, Jianxin Wang, Ying Wang, Bo Song, Xiaohua Hu
Measuring Disease Similarity Based on Multiple Heterogeneous Disease Information Networks. BIBM (2019)
Zheng Chen, Xinli Yu, Chi Zhang, Jin Zhang, Cui Lin, Bo Song, Jianliang Gao, Xiaohua Hu, Wei-Shih Yang, Erjia Yan
Fast Botnet Detection From Streaming Logs Using Online Lanczos Method. CoRR (2018)
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan
DiffGraph: an R package for identifying gene network rewiring using differential graphical models. Bioinform. 34 (9) (2018)
Zheng Chen, Yong Zhang, Yue Shang, Xiaohua Hu
Unifying Topic, Sentiment & Preference in an HDP-Based Rating Regression Model for Online Reviews. CoRR (2018)
Xusheng Li, Xiaoyan Wang, Ran Zhong, Duo Zhong, Tingting He, Xiaohua Hu, Xingpeng Jiang
A Hybrid Deep Learning Framework for Bacterial Named Entity Recognition. BIBM (2018)
Xianjun Shen, Xue Gong, Xingpeng Jiang, Jincai Yang, Tingting He, Xiaohua Hu
High-order Organization of Weighted Microbial Interaction Network. BIBM (2018)
Yuanyuan Ma, Xiaohua Hu, Tingting He, Xianchao Zhu, Meijun Zhou, Xingpeng Jiang
ESNMF: Evolutionary Symmetric Nonnegative Matrix Factorization for Dissecting Dynamic Microbial Networks. ICIC (3) (2018)
Xianjun Shen, Huan Zhu, Xingpeng Jiang, Xiaohua Hu, Jincai Yang
A Novel Approach Based on Bi-Random Walk to Predict Microbe-Disease Associations. ICIC (3) (2018)
Bo Song, Jianliang Gao, Hongliang Du, Zheng Chen, Xiaohua Hu
Aligning Multiple PPI Networks with Representation Learning on Networks. BIBM (2018)
Ting Xu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Qiang Zhu, Min Pan, Lei Liu, Bojing Li, Tingting He, Xingpeng Jiang, Xiaohua Hu
An Ensemble Feature Selection Method Based on Deep Forest for Microbiome-Wide Association Studies. BIBM (2018)
Zheng Chen, Xinli Yu, Yuan Ling, Bo Song, Wei Quan, Xiaohua Hu, Erjia Yan
Correlated Anomaly Detection from Large Streaming Data. IEEE BigData (2018)
Jianliang Gao, Bo Song, Xiaohua Hu, Fengxia Yan, Jianxin Wang
ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species. BMC Bioinform. (9) (2018)
Xianchao Zhu, Xianjun Shen, Xingpeng Jiang, Kaiping Wei, Tingting He, Yuanyuan Ma, Jiaqi Liu, Xiaohua Hu
Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data. BMC Bioinform. (20) (2018)
Yingiun Ma, Leixin Ge, Yuanyuan Ma, Xingpeng Jiang, Tingting He, Xiaohua Hu
Kernel Soft-neighborhood Network Fusion for MiRNA-Disease Interaction Prediction. BIBM (2018)
Sisi Chen, Dan Liu, Jia Zheng, Pingtao Chen, Xiaohua Hu, Xingpeng Jiang
Predicting Microbe-Disease Association by Kernelized Bayesian Matrix Factorization. ICIC (2) (2018)
Yingiun Ma, Limin Yu, Tingting He, Xiaohua Hu, Xingpeng Jiang
Prediction of Long Non-coding RNA-protein Interaction through Kernel Soft-neighborhood Similarity. BIBM (2018)
Dan Liu, Xiaohua Hu, Tingting He, Xingpeng Jiang
Virus-host Association Prediction by using Kernelized Logistic Matrix Factorization on Heterogeneous Networks. BIBM (2018)
Yan Yan, Jiangyong Wei, Xiaohua Hu, Tianhai Tian
Inference of protein-protein networks for triple-negative breast cancer using single-patient proteomic data. BIBM (2018)
Qiang Zhu, Qing Zhu, Min Pan, Xingpeng Jiang, Xiaohua Hu, Tingting He
The Phylogenetic Tree based Deep Forest for Metagenomic Data Classification. BIBM (2018)
Zheng Chen, Xinli Yu, Yuan Ling, Bo Song, Wei Quan, Xiaohua Hu, Erjia Yan
Correlated Anomaly Detection from Large Streaming Data. CoRR (2018)
Alex S. Felmeister, Angela J. Waanders, Sarah E. S. Leary, Jeff Stevens, Jennifer L. Mason, Rachel Teneralli, Xiaohua Hu, L. Charles Bailey
Preliminary exploratory data analysis of simulated national clinical data research network for future use in annotation of a rare tumor biobanking initiative. BIBM (2017)
Jincai Yang, Chunjie Guo, Xingpeng Jiang, Xiaohua Hu, Xianjun Shen
Systematic characterization and prediction of tumor-associated genes in mouse using microrna. BIBM (2017)
Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Li Gao, Tingting He, Xiaohua Hu
Visualization of non-metric relationships by adaptive learning multiple maps t-SNE regularization. IEEE BigData (2017)
Mengwen Liu, Wanying Ding, Dae Hoon Park, Yi Fang, Rui Yan, Xiaohua Hu
Which used product is more sellable? A time-aware approach. Inf. Retr. J. 20 (2) (2017)
Zheng Chen, Xinli Yu, Chi Zhang, Jin Zhang, Cui Lin, Bo Song, Jianliang Gao, Xiaohua Hu, Wei-Shih Yang, Erjia Yan
Fast botnet detection from streaming logs using online lanczos method. IEEE BigData (2017)
Yizhou Zang, Xiaohua Hu
LKT-FM: A Novel Rating Pattern Transfer Model for Improving Non-overlapping Cross-Domain Collaborative Filtering. ECML/PKDD (2) (2017)
Xingpeng Jiang, Xiaohua Hu, Weiwei Xu
Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Yong Zhang, Xiaohua Hu, Xingpeng Jiang
Multi-View Clustering of Microbiome Samples by Robust Similarity Network Fusion and Spectral Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Tingting He, Xiaohua Hu
Visualization of disease relationships by multiple maps t-SNE regularization based on Nesterov accelerated gradient. BIBM (2017)
Mengwen Liu, Yi Fang, Alexander G. Choulos, Dae Hoon Park, Xiaohua Hu
Product review summarization through question retrieval and diversification. Inf. Retr. J. 20 (6) (2017)
Jincai Yang, Huichao Gu, Xingpeng Jiang, Qingyang Huang, Xiaohua Hu, Xianjun Shen
Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm. Complex. 2017 (2017)
Jincai Yang, Fuli Zhang, Xingpeng Jiang, Xianjun Shen, Xiaohua Hu
Classify and identify the risky loci of type 2 diabetes with computational method. BIBM (2017)
Chunyu Zhao, Yizhou Zang, Wei Quan, Xiaohua Hu, Ahmet Sacan
HIV1-human protein-protein interaction prediction based on interface architecture similarity. BIBM (2017)
Zheng Chen, Xinli Yu, Bo Song, Jianliang Gao, Xiaohua Hu, Wei-Shih Yang
Community-Based Network Alignment for Large Attributed Network. CIKM (2017)
Xinli Yu, Zheng Chen, Wei-Shih Yang, Xiaohua Hu, Erjia Yan, Guangrong Li
Large-scale joint topic, sentiment & user preference analysis for online reviews. IEEE BigData (2017)
Jianliang Gao, Bo Song, Zheng Chen, Weimao Ke, Wanying Ding, Xiaohua Hu
-Anonymization Privacy Protection for Social Networks. SIGIR (2017)
Dan Liu, Xingpeng Jiang, Huiru Jane Zheng, Bo Xie, Haiying Wang, Tingting He, Xiaohua Hu
The modularity of microbial interaction network in healthy human saliva: Stability and specificity. BIBM (2017)
Yuan Ling, Yuan An, Mengwen Liu, Sadid A. Hasan, Ye-tian Fan, Xiaohua Hu
Integrating extra knowledge into word embedding models for biomedical NLP tasks. IJCNN (2017)
Xiaoyan Wang, Xingpeng Jiang, Mengwen Liu, Tingting He, Xiaohua Hu
Bacterial named entity recognition based on dictionary and conditional random field. BIBM (2017)
Yizhou Zang, Xiaohua Hu
Heterogeneous knowledge transfer via domain regularization for improving cross-domain collaborative filtering. IEEE BigData (2017)
Ye-tian Fan, Xiwei Tang, Xiaohua Hu, Wei Wu, Qing Ping
Prediction of essential proteins based on subcellular localization and gene expression correlation. BMC Bioinform. 18 (S-13) (2017)
Yiping Song, Lili Mou, Rui Yan, Li Yi, Zinan Zhu, Xiaohua Hu, Ming Zhang
Dialogue Session Segmentation by Embedding-Enhanced TextTiling. CoRR (2016)
Tingting He, Peng Li, Xiaohua Hu, Xianjun Shen, Yan Wang, Junmin Zhao
A novel proteins complex identification based on connected affinity and multi-level seed extension. Int. J. Data Min. Bioinform. 14 (1) (2016)
Yuanyuan Ma, Xiaohua Hu, Tingting He, Xingpeng Jiang
Multi-view clustering microbiome data by joint symmetric nonnegative matrix factorization with Laplacian regularization. BIBM (2016)
Zheng Chen, Yong Zhang, Yue Shang, Xiaohua Hu
Unifying Topic, Sentiment & Preference in an HDP-Based Rating Regression Model for Online Reviews. ACML (2016)
Xiwei Tang, Xiaohua Hu, Xuejun Yang, Yuan Sun
A algorithm for identifying disease genes by incorporating the subcellular localization information into the protein-protein interaction networks. BIBM (2016)
Xianjun Shen, Jin Zhou, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang, Dan Xie
A novel identified temporal protein complexes strategy inspired by density-distance and brainstorming process. BIBM (2016)
Xianjun Shen, Yao Chen, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang
Predicting disease-microbe association by random walking on the heterogeneous network. BIBM (2016)
Wanying Ding, Yue Zhang, Chaomei Chen, Xiaohua Hu
Semi-supervised Dirichlet-Hawkes process with applications of topic detection and tracking in Twitter. IEEE BigData (2016)
Jianliang Gao, Bo Song, Ping Liu, Weimao Ke, Jianxin Wang, Xiaohua Hu
Parallel top-k subgraph query in massive graphs: Computing from the perspective of single vertex. IEEE BigData (2016)
Bo Song, Jianliang Gao, Weimao Ke, Xiaohua Hu
Achieving high k-coverage and k-consistency in global alignment of multiple PPI networks. BIBM (2016)
Jiangyong Wei, Xiaohua Hu, Xiufen Zou, Tianhai Tian
Inference of genetic regulatory network for stem cell using single cells expression data. BIBM (2016)
Ye-tian Fan, Xiaohua Hu, Xiwei Tang, Qing Ping, Wei Wu
A novel algorithm for identifying essential proteins by integrating subcellular localization. BIBM (2016)
Qi Shen, Jiyuan Hu, Ning Jiang, Xiaohua Hu, Zewei Luo, Hong Zhang
contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples. Bioinform. 32 (5) (2016)
Xiaoli Song, Yan Rui, Xiaohua Hu
Pairwise topic model and its application to topic transition and evolution. IEEE BigData (2016)
Xingpeng Jiang, Xiaohua Hu, Tingting He
Identification of the clustering structure in microbiome data by density clustering on the Manhattan distance. Sci. China Inf. Sci. 59 (7) (2016)
Yiping Song, Lili Mou, Rui Yan, Li Yi, Zinan Zhu, Xiaohua Hu, Ming Zhang
Dialogue Session Segmentation by Embedding-Enhanced TextTiling. INTERSPEECH (2016)
Rui Yan, Cheng-Te Li, Hsun-Ping Hsieh, Po Hu, Xiaohua Hu, Tingting He
Socialized Language Model Smoothing via Bi-directional Influence Propagation on Social Networks. WWW (2016)
Ezgi Can Ozan, Serkan Kiranyaz, Moncef Gabbouj, Xiaohua Hu
Self-organizing binary encoding for Approximate Nearest Neighbor search. EUSIPCO (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiaohua Hu