Xiufen Zou

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 34

Top Topics

Evolutionary Optimization

Quantitative Analysis

Gene Expression

Mathematical Modeling

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Int. J. Bifurc. Chaos

Comput. Math. Methods Medicine

Publications

Ke Qi, Shun Wang, Yuyang Xiao, Xiufen Zou
Mathematical modeling and dynamic analysis for cancer resistance incorporating persister cells. Commun. Nonlinear Sci. Numer. Simul. 134 (2024)
Juan Shen, Zhihao Yao, Xuewen Tan, Xiufen Zou
Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors. Int. J. Bifurc. Chaos 33 (1) (2023)
Sicheng Li, Shun Wang, Xiufen Zou
Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment. Comput. Math. Appl. 113 (2022)
Zhijie Ni, Xiaoying Zheng, Xiao Zheng, Xiufen Zou
scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Yu Zhou, Mingzhan Huang, Ying'an Jiang, Xiufen Zou
Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria. Int. J. Bifurc. Chaos 31 (11) (2021)
Shun Wang, Mengqian Hao, Zishu Pan, Jinzhi Lei, Xiufen Zou
Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients. PLoS Comput. Biol. 17 (11) (2021)
Wei Zhang, Yuanyuan Li, Xiufen Zou
SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data. IEEE J. Biomed. Health Informatics 25 (1) (2021)
Cong Wang, Yu Chen, Jun He, Xiufen Zou
Influence of the Binomial Crossover on Performance of Randomized Search Heuristics. CoRR (2021)
Bo Liu, Fang-Xiang Wu, Xiufen Zou
scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data. IEEE J. Biomed. Health Informatics 25 (8) (2021)
Wei Zhang, Jia Xu, Xiufen Zou
Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Xiao Zheng, Yuan Huang, Xiufen Zou
scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. PLoS Comput. Biol. 16 (7) (2020)
Dingjie Wang, Wei Yu, Xiufen Zou
Tensor-based mathematical framework and new centralities for temporal multilayer networks. Inf. Sci. 512 (2020)
Xiaoying Zheng, Suoqin Jin, Qing Nie, Xiufen Zou
scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. IEEE Trans. Biomed. Eng. 67 (5) (2020)
Anjing Fan, Haitao Wang, Hua Xiang, Xiufen Zou
Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (6) (2019)
Wei Zheng, Dingjie Wang, Xiufen Zou
Control of multilayer biological networks and applied to target identification of complex diseases. BMC Bioinform. 20 (1) (2019)
Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou
Integrating network topology, gene expression data and GO annotation information for protein complex prediction. J. Bioinform. Comput. Biol. 17 (1) (2019)
Yu Chen, Yuanyuan Yang, Yaochu Jin, Xiufen Zou
Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method. CoRR (2019)
Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou
Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (1) (2018)
Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou
Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information". IEEE ACM Trans. Comput. Biol. Bioinform. 15 (3) (2018)
Suoqin Jin, Dingjie Wang, Xiufen Zou
Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems. SIAM J. Appl. Math. 78 (1) (2018)
Gang Wang, Yuanyuan Li, Xiufen Zou
Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis. Comput. Math. Methods Medicine 2017 (2017)
Dingjie Wang, Xiufen Zou
Control Energy and controllability of multilayer Networks. Adv. Complex Syst. 20 (4-5) (2017)
Yuewu Liu, Xiufen Zou
Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization. PLoS Comput. Biol. 13 (9) (2017)
Yu Chen, Dong Chen, Xiufen Zou
Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization. Comput. Math. Methods Medicine 2017 (2017)
Yuanyuan Li, Xiufen Zou
Identifying disease modules and components of viral infections based on multi-layer networks. Sci. China Inf. Sci. 59 (7) (2016)
Jiangyong Wei, Xiaohua Hu, Xiufen Zou, Tianhai Tian
Inference of genetic regulatory network for stem cell using single cells expression data. BIBM (2016)
Gang Wang, Xiufen Zou
Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective. Int. J. Bifurc. Chaos 26 (14) (2016)
Jinying Tan, Xiufen Zou
Optimal Control Strategy for Abnormal Innate Immune Response. Comput. Math. Methods Medicine 2015 (2015)
Dingjie Wang, Suoqin Jin, Fang-Xiang Wu, Xiufen Zou
Estimation of control Energy and control Strategies for Complex Networks. Adv. Complex Syst. 18 (7-8) (2015)
Wei Zhang, Xiufen Zou
A New Method for Detecting Protein Complexes based on the Three Node Cliques. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Yu Chen, Xiufen Zou
Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method. CoRR (2015)
Yu Chen, Weicheng Xie, Xiufen Zou
A binary differential evolution algorithm learning from explored solutions. Neurocomputing 149 (2015)
Wenlong Li, Ming Yi, Xiufen Zou
Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast. Quant. Biol. 3 (2) (2015)
Suoqin Jin, Lili Niu, Gang Wang, Xiufen Zou
Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics. Int. J. Bifurc. Chaos 25 (7) (2015)
Yu Chen, Xiufen Zou
Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts. Inf. Sci. 262 (2014)
Yu Chen, Weicheng Xie, Xiufen Zou
A binary differential evolution algorithm learning from explored solutions. CoRR (2014)
Yu Chen, Xiufen Zou
Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm. ICIC (1) (2014)
Jinying Tan, Xiufen Zou
Complex Dynamical Analysis of a Coupled Network from Innate Immune responses. Int. J. Bifurc. Chaos 23 (11) (2013)
Weicheng Xie, Wei Yu, Xiufen Zou
Diversity-maintained differential evolution embedded with gradient-based local search. Soft Comput. 17 (8) (2013)
Yu Chen, Weicheng Xie, Xiufen Zou
How can surrogates influence the convergence of evolutionary algorithms? Swarm Evol. Comput. 12 (2013)
Suoqin Jin, Xiufen Zou
Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization. BMC Syst. Biol. 7 (2013)
Wei Zhang, Xiufen Zou
Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (3) (2013)
Wei Zhang, Xiufen Zou
Synchronization ability of coupled cell-cycle oscillators in changing environments. BMC Syst. Biol. 6 (S-1) (2012)
Yu Chen, Xiufen Zou, Jun He
Drift conditions for estimating the first hitting times of evolutionary algorithms. Int. J. Comput. Math. 88 (1) (2011)
Yu Chen, Kai Zhang, Xiufen Zou
A Population-Based Hybrid Extremal Optimization Algorithm. ICIC (3) (2011)
Yu Chen, Xiufen Zou, Weicheng Xie
Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front. Inf. Sci. 181 (16) (2011)
Wei Zhang, Xiufen Zou
The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm. ISICA (1) (2010)
Minzhong Liu, Xiufen Zou, Yu Chen, Zhijian Wu
Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances. IEEE Congress on Evolutionary Computation (2009)
Rongxiang Yuan, Xiufen Zou, Chunlin Xu
A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems. GEC Summit (2009)
Chunlin Xu, Xiufen Zou, Rongxiang Yuan, Chuansheng Wu
Optimal coordination of protection relays using new hybrid evolutionary algorithm. IEEE Congress on Evolutionary Computation (2008)
Xiufen Zou, Yu Chen, Minzhong Liu, Lishan Kang
A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems. IEEE Trans. Syst. Man Cybern. Part B 38 (5) (2008)
Chuansheng Wu, Jinrong He, Xiufen Zou
A Genetic Algorithm approach for selecting Tikhonov regularization parameter. IEEE Congress on Evolutionary Computation (2008)
Xiufen Zou, Minzhong Liu, Zishu Pan
Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm. Biosyst. 91 (1) (2008)
Minzhong Liu, Xiufen Zou, Lishan Kang
An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space. ISICA (2007)
Zhuo Kang, Lishan Kang, Xiufen Zou, Minzhong Liu, Changhe Li, Ming Yang, Yan Li, Yuping Chen, Sanyou Zeng
A New Evolutionary Decision Theory for Many-Objective Optimization Problems. ISICA (2007)
Xiufen Zou, Yu Chen, Zishu Pan
Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm. SEAL (2006)
Xiufen Zou, Lishan Kang
Fast annealing genetic algorithm for multi-objective optimization problems. Int. J. Comput. Math. 82 (8) (2005)
Xiufen Zou, Minzhong Liu, Lishan Kang, Jun He
A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics. PPSN (2004)
Xiufen Zou, Yuanxiang Li, Lishan Kang, Zhijian Wu
An efficient dynamical evolutionary algorithm for global optimization. Int. J. Comput. Math. 80 (11) (2003)
Yuanxiang Li, Xiufen Zou, Lishan Kang, Zbigniew Michalewicz
A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics. J. Comput. Sci. Technol. 18 (3) (2003)
Xiufen Zou, Lishan Kang, Yuanxiang Li
A dynamical evolutionary algorithm for constrained optimization problems. IEEE Congress on Evolutionary Computation (2002)
Yuanxiang Li, Xiufen Zou, Zhangcan Huang
Use of Multi-scalar Analysis for Building Lattice Models of PDE's. Parallel Algorithms Appl. 9 (3-4) (1996)