Xiao Sun

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 12

Top Topics

Single Nucleotide Polymorphisms

Accurate Estimation

Medical Literature

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Bioinform. Comput. Biol.

Publications

Hongjia Liu, Huamei Li, Amit Sharma, Wenjuan Huang, Duo Pan, Yu Gu, Lu Lin, Xiao Sun, Hongde Liu
scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets. Briefings Bioinform. 24 (3) (2023)
Yuanyuan Chen, Hao Zhang, Xiao Sun
Improving the performance of single-cell RNA-seq data mining based on relative expression orderings. Briefings Bioinform. 24 (1) (2023)
Dewu Ding, Xiao Sun
Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Shaoxun Yuan, Haitao Li, Jiansheng Wu, Xiao Sun
Classification of Mild Cognitive Impairment With Multimodal Data Using Both Labeled and Unlabeled Samples. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Dewu Ding, Xiao Sun
A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Jiahao Xie, Yiran Cai, Huamei Li, Jiahui Wu, Xinlei Zhao, Kun Luo, Amit Sharma, Jianming Xie, Xiao Sun, Hongde Liu
DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. Biosyst. 185 (2019)
Xin Ma, Jing Guo, Xiao Sun
Prediction of microRNA-binding residues in protein using a Laplacian support vector machine based on sequence information. J. Bioinform. Comput. Biol. 16 (3) (2018)
Xiangfei Cheng, Yue Hou, Yumin Nie, Yiru Zhang, Huan Huang, Hongde Liu, Xiao Sun
Nucleosome Positioning of Intronless Genes in the Human Genome. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Yue Hou, Huan Huang, Wenqiao Hu, Hongde Liu, Xiao Sun
Histone modifications influence skipped exons inclusion. J. Bioinform. Comput. Biol. 15 (1) (2017)
Chang-Chang Cao, Xiao Sun
Combinatorial pooled sequencing: experiment design and decoding. Quant. Biol. 4 (1) (2016)
Jing Tu, Na Lu, Mengqin Duan, An Ju, Xiao Sun, Zuhong Lu
Comparison of the experimental methods in haplotype sequencing via next generation sequencing. Quant. Biol. 4 (2) (2016)
Chang-Chang Cao, Xiao Sun
Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information. J. Bioinform. Comput. Biol. 14 (4) (2016)
Xin Ma, Jing Guo, Ke Xiao, Xiao Sun
PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Chang-Chang Cao, Xiao Sun
Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing. Bioinform. 31 (4) (2015)
Xiao Ding, Fudong Cheng, Chang-Chang Cao, Xiao Sun
DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection. BMC Bioinform. 16 (2015)
Chang-Chang Cao, Cheng Li, Xiao Sun
Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers. BMC Bioinform. 15 (2014)
Lejun Gong, Ronggen Yang, Qin Yan, Xiao Sun
Prioritization of Disease Susceptibility Genes Using LSM/SVD. IEEE Trans. Biomed. Eng. 60 (12) (2013)
Lejun Gong, Yunyang Yan, Xiao Sun
Target Identification and Target-centered Network Construction from Biomedical Literature. J. Softw. 8 (2) (2013)
Xin Ma, Jing Guo, Hongde Liu, Jianming Xie, Xiao Sun
Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Jiao Chen, ZuoLei Dai, Chang-Chang Cao, Qianqian Zhang, Hongde Liu, Xiao Sun
Next-generation sequencing data processing: Analysis of unmapped reads and extremely high mapped peaks. BMEI (2012)
Huan Huang, Shuangxin Yu, Hongde Liu, Xiao Sun
Nucleosome organization in sequences of alternative events in human genome. Biosyst. 109 (2) (2012)
Hongde Liu, Shuhai Lin, Zongwei Cai, Xiao Sun
Role of 10-11 bp periodicities of eukaryotic DNA sequence in nucleosome positioning. Biosyst. 105 (3) (2011)
Hongde Liu, Xiao Sun
Nucleosomes Are Well Positioned at Both Ends of Exons. LSMS/ICSEE (2010)
Lejun Gong, Xiao Sun
ATRMiner : A system for automatic biomedical named entities recognition. ICNC (2010)
Xinan Yang, Yong Huang, James L. Chen, Jianming Xie, Xiao Sun, Yves A. Lussier
Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. BMC Bioinform. 10 (S-9) (2009)
Lejun Gong, Yi Yuan, You-Bing Wei, Xiao Sun
A Hybrid Approach for Biomedical Entity Name Recognition. BMEI (2009)
Xin Ma, Jiansheng Wu, Hongde Liu, Xinan Yang, Jianming Xie, Xiao Sun
SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences. IJCBS (2009)
Jiansheng Wu, Hongde Liu, Xueye Duan, Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. Bioinform. 25 (1) (2009)
Xinan Yang, Xiao Sun, Jianming Xie, Zuhong Lu
Comparability of gene expression in human blood, immune and carcinoma cells. Appl. Math. Comput. 205 (1) (2008)
Xinan Yang, Xiao Sun
Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers. BMC Bioinform. 8 (2007)
Jiansheng Wu, Hongtao Wu, Hongde Liu, Haoyan Zhou, Xiao Sun
Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes. LSMS (2) (2007)
Peng Jiang, Haonan Wu, Wenkai Wang, Wei Ma, Xiao Sun, Zuhong Lu
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Peng Jiang, Haonan Wu, Yao Da, Fei Sang, Jiawei Wei, Xiao Sun, Zuhong Lu
RFRCDB-siRNA: Improved design of siRNAs by random forest regression model coupled with database searching. Comput. Methods Programs Biomed. 87 (3) (2007)
Peng Jiang, Haonan Wu, Jiawei Wei, Fei Sang, Xiao Sun, Zuhong Lu
RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition features. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Tong Zhou, Jianhong Weng, Xiao Sun, Zuhong Lu
Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiaebased on codon composition. BMC Bioinform. 7 (2006)