Timothy F. Oliver

Publication Activity (10 Years)

Years Active: 2003-2009
Publications (10 Years): 0

Publications

Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell
High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms. IEEE Trans. Inf. Technol. Biomed. 13 (5) (2009)
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
Integrating FPGA acceleration into HMMer. Parallel Comput. 34 (11) (2008)
Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong
C-Based Design Methodology for FPGA Implementation of ClustalW MSA. PRIB (2007)
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
High Performance Database Searching with HMMer on FPGAs. IPDPS (2007)
Timothy F. Oliver, Douglas L. Maskell
Prerouted FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System. EURASIP J. Embed. Syst. 2007 (2007)
John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman
MPI-HMMER-Boost: Distributed FPGA Acceleration. J. VLSI Signal Process. 48 (3) (2007)
Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens
High-speed Multiple Sequence Alignment on a reconfigurable platform. Int. J. Bioinform. Res. Appl. 2 (4) (2006)
Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell
Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware. International Conference on Computational Science (1) (2006)
Douglas L. Maskell, Timothy F. Oliver
Pre-Routed FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System. Dynamically Reconfigurable Architectures (2006)
Timothy F. Oliver, Douglas L. Maskell
Execution Objects for Dynamically Reconfigurable FPGA Systems. FPL (2006)
Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens
Multiple Sequence Alignment on an FPGA. ICPADS (2) (2005)
Timothy F. Oliver, Douglas L. Maskell
An FPGA Model for Developing Dynamic Circuit Computing. FPT (2005)
Jacop Yanto, Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell
Biological Sequence Analysis with Hidden Markov Models on an FPGA. Asia-Pacific Computer Systems Architecture Conference (2005)
Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. Bioinform. 21 (16) (2005)
Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell
Reconfigurable architectures for bio-sequence database scanning on FPGAs. IEEE Trans. Circuits Syst. II Express Briefs (12) (2005)
Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Achutavarrier Prasad Vinod
A reconfigurable architecture for scanning biosequence databases. ISCAS (5) (2005)
Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell
Hyper customized processors for bio-sequence database scanning on FPGAs. FPGA (2005)
Timothy F. Oliver, Bertil Schmidt
High Performance Biosequence Database Scanning on Reconfigurable Platforms. IPDPS (2004)
Timothy F. Oliver, Douglas L. Maskell
Towards Run-Time Re-Configurable Techniques for Real-Time Embedded Applications. Engineering of Reconfigurable Systems and Algorithms (2003)