Sune Darkner

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 48

Top Topics

Image Registration

Diffusion Weighted

Cervical Cancer

Top Venues

Medical Imaging: Image Processing

Publications

Jon Sporring, Peidi Xu, Jiahao Lu, François Lauze, Sune Darkner
Locally orderless networks. CoRR (2024)
Rasmus Netterstrøm, Nikolay Kutuzov, Sune Darkner, Maurits Jørring Pallesen, Martin Johannes Lauritzen, Kenny Erleben, François Lauze
Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images. CoRR (2023)
Peidi Xu, Blaire Lee, Olga V. Sosnovtseva, Charlotte Mehlin Sørensen, Kenny Erleben, Sune Darkner
Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation. MILLanD@MICCAI (2023)
Jiahao Lu, Chong Yin, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner
cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis. ISBI (2023)
Peidi Xu, Niels-Henrik Holstein-Rathlou, Stinne Byrholdt Søgaard, Carsten Gundlach, Charlotte Mehlin Sørensen, Kenny Erleben, Olga V. Sosnovtseva, Sune Darkner
A Hybrid Approach to Full-Scale Reconstruction of Renal Arterial Network. CoRR (2023)
Abraham George Smith, Denis Kutnár, Ivan Richter Vogelius, Sune Darkner, Jens Petersen
Localise to segment: crop to improve organ at risk segmentation accuracy. CoRR (2023)
Fei Lyu, Mang Ye, Jonathan Frederik Carlsen, Kenny Erleben, Sune Darkner, Pong C. Yuen
Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation. IEEE Trans. Medical Imaging 42 (3) (2023)
Peidi Xu, Torkan Gholamalizadeh, Faezeh Moshfeghifar, Sune Darkner, Kenny Erleben
Deep-Learning-Based Segmentation of Individual Tooth and Bone With Periodontal Ligament Interface Details for Simulation Purposes. IEEE Access 11 (2023)
Peidi Xu, Olga V. Sosnovtseva, Charlotte Mehlin Sørensen, Kenny Erleben, Sune Darkner
Extremely weakly-supervised blood vessel segmentation with physiologically based synthesis and domain adaptation. CoRR (2023)
Peidi Xu, Faezeh Moshfeghifar, Torkan Gholamalizadeh, Michael Bachmann Nielsen, Kenny Erleben, Sune Darkner
Auto-segmentation of Hip Joints using MultiPlanar UNet with Transfer learning. CoRR (2022)
Jiahao Lu, Chong Yin, Oswin Krause, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner
Reducing Annotation Need in Self-Explanatory Models for Lung Nodule Diagnosis. CoRR (2022)
Jiahao Lu, Chong Yin, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner
cRedAnno+: Annotation Exploitation in Self-Explanatory Lung Nodule Diagnosis. CoRR (2022)
Jon Sporring, Sune Darkner
Reconstructing Binary Signals from Local Histograms. Entropy 24 (3) (2022)
Faezeh Moshfeghifar, Torkan Gholamalizadeh, Zachary Ferguson, Teseo Schneider, Michael Bachmann Nielsen, Daniele Panozzo, Sune Darkner, Kenny Erleben
LibHip: An open-access hip joint model repository suitable for finite element method simulation. Comput. Methods Programs Biomed. 226 (2022)
Torkan Gholamalizadeh, Faezeh Moshfeghifar, Zachary Ferguson, Teseo Schneider, Daniele Panozzo, Sune Darkner, Masrour Makaremi, François Chan, Peter Lempel Søndergaard, Kenny Erleben
Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw. CoRR (2022)
Torkan Gholamalizadeh, Sune Darkner, Peter Lempel Søndergaard, Kenny Erleben
A multi-patient analysis of the center of rotation trajectories using finite element models of the human mandible. CoRR (2022)
Xiang Dai, Ilias Chalkidis, Sune Darkner, Desmond Elliott
Revisiting Transformer-based Models for Long Document Classification. EMNLP (Findings) (2022)
Jon Sporring, Sune Darkner
An algebra for local histograms. Frontiers Comput. Sci. 4 (2022)
Xiang Dai, Ilias Chalkidis, Sune Darkner, Desmond Elliott
Revisiting Transformer-based Models for Long Document Classification. CoRR (2022)
Peidi Xu, Faezeh Moshfeghifar, Torkan Gholamalizadeh, Michael Bachmann Nielsen, Kenny Erleben, Sune Darkner
Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning. MILLanD@MICCAI (2022)
Renfei Liu, François Lauze, Erik Bekkers, Kenny Erleben, Sune Darkner
Group Convolutional Neural Networks for DWI Segmentation. GeoMedIA (2022)
Faezeh Moshfeghifar, Max Kragballe Nielsen, José D. Tascón-Vidarte, Sune Darkner, Kenny Erleben
A direct geometry processing cartilage generation method using segmented bone models from datasets with poor cartilage visibility. CoRR (2022)
Henrik G. Jensen, François Lauze, Sune Darkner
Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images. J. Math. Imaging Vis. 64 (1) (2022)
Torkan Gholamalizadeh, Faezeh Moshfeghifar, Zachary Ferguson, Teseo Schneider, Daniele Panozzo, Sune Darkner, Masrour Makaremi, François Chan, Peter Lempel Søndergaard, Kenny Erleben
Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw. Comput. Methods Programs Biomed. 224 (2022)
Jiahao Lu, Chong Yin, Oswin Krause, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner
Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis. iMIMIC@MICCAI (2022)
Mathias Perslev, Sune Darkner, Lykke Kempfner, Miki Nikolic, Poul Jørgen Jennum, Christian Igel
U-Sleep: resilient high-frequency sleep staging. npj Digit. Medicine 4 (2021)
José D. Tascón-Vidarte, Isak Wahlstedt, Julien Jomier, Kenny Erleben, Ivan R. Vogelius, Sune Darkner
Cine-MRI Simulation to Evaluate Tumor Tracking. SASHIMI@MICCAI (2021)
Susanne Claus, Pierre Kerfriden, Faezeh Moshfeghifar, Sune Darkner, Kenny Erleben, C. Wong
Contact modeling from images using cut finite element solvers. Adv. Model. Simul. Eng. Sci. 8 (1) (2021)
Sune Darkner, José D. Tascón-Vidarte, François Lauze
First Order Locally Orderless Registration. SSVM (2021)
Abraham George Smith, Jens Petersen, Cynthia Terrones-Campos, Anne Kiil Berthelsen, Nora Jarrett Forbes, Sune Darkner, Lena Specht, Ivan Richter Vogelius
RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy. CoRR (2021)
Renfei Liu, François Lauze, Kenny Erleben, Sune Darkner
Bundle Geodesic Convolutional Neural Network for DWI Segmentation from Single Scan Learning. CDMRI@MICCAI (2021)
Paul Schreiner, Maksym Perepichka, Hayden Lewis, Sune Darkner, Paul G. Kry, Kenny Erleben, Victor B. Zordan
Global Position Prediction for Interactive Motion Capture. Proc. ACM Comput. Graph. Interact. Tech. 4 (3) (2021)
Sune Darkner, Jose D. Tascon, François Lauze
First Order Locally Orderless Registration. CoRR (2021)
Torkan Gholamalizadeh, Sune Darkner, Paolo Maria Cattaneo, Peter Søndergaard, Kenny Erleben
Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients. CoRR (2020)
Rune Kok Nielsen, Sune Darkner, Aasa Feragen
TopAwaRe: Topology-Aware Registration. MICCAI (2) (2019)
Mathias Perslev, Michael Hejselbak Jensen, Sune Darkner, Poul Jørgen Jennum, Christian Igel
U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging. CoRR (2019)
Fredrik Holsten, Morten Pol Engell-Nørregård, Sune Darkner, Kenny Erleben
Data Driven Inverse Kinematics of Soft Robots using Local Models. ICRA (2019)
Mathias Perslev, Michael Hejselbak Jensen, Sune Darkner, Poul Jørgen Jennum, Christian Igel
U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging. NeurIPS (2019)
Henrik Grønholt Jensen, François Lauze, Sune Darkner
Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images. CoRR (2019)
Sune Darkner, Stefan Sommer, Andreas Schuhmacher, Henrik Ingerslev Anders O. Baandrup, Carsten Thomsen, Søren Jønsson
An Average of the Human Ear Canal: Recovering Acoustical Properties via Shape Analysis. CoRR (2018)
Sune Darkner, Akshay Pai, Matthew G. Liptrot, Jon Sporring
Collocation for Diffeomorphic Deformations in Medical Image Registration. IEEE Trans. Pattern Anal. Mach. Intell. 40 (7) (2018)
Fredrik Holsten, Sune Darkner, Morten Pol Engell-Nørregård, Kenny Erleben
Local Models for Data Driven Inverse Kinematics of Soft Robots. Symposium on Computer Animation (Posters) (2018)
Akshay Pai, Stefan Sommer, Lars Lau Rakêt, Line Kühnel, Sune Darkner, Lauge Sørensen, Mads Nielsen
A Statistical Model for Simultaneous Template Estimation, Bias Correction, and Registration of 3D Brain Images. CoRR (2017)
Niklas Kasenburg, Sune Darkner, Ute Hahn, Matthew G. Liptrot, Aasa Feragen
Structural parcellation of the thalamus using shortest-path tractography. ISBI (2016)
Akshay Pai, Stefan Sommer, Lars Lau Rakêt, Line Kühnel, Sune Darkner, Lauge Sørensen, Mads Nielsen
A Statistical Model for Simultaneous Template Estimation, Bias Correction, and Registration of 3D Brain Images. MCV/BAMBI@MICCAI (2016)
Niklas Kasenburg, Morten Vester Pedersen, Sune Darkner
Finding significantly connected voxels based on histograms of connection strengths. Medical Imaging: Image Processing (2016)
Mateusz Michalkiewicz, Akshay Pai, Kelvin K. Leung, Stefan Sommer, Sune Darkner, Lauge Sørensen, Jon Sporring, Mads Nielsen
Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation. Medical Imaging: Image Processing (2016)
Akshay Pai, Stefan Sommer, Lauge Sørensen, Sune Darkner, Jon Sporring, Mads Nielsen
Kernel Bundle Diffeomorphic Image Registration Using Stationary Velocity Fields and Wendland Basis Functions. IEEE Trans. Medical Imaging 35 (6) (2016)
Akshay Pai, Stefan Klein, Stefan Sommer, Sune Darkner, Jon Sporring, Mads Nielsen
Diffeomorphic image registration with automatic time-step adjustment. ISBI (2015)
Henrik G. Jensen, François Lauze, Mads Nielsen, Sune Darkner
Locally Orderless Registration for Diffusion Weighted Images. MICCAI (2) (2015)
Akshay Pai, Stefan Sommer, Lauge Sørensen, Sune Darkner, Jon Sporring, Mads Nielsen
Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel. Medical Imaging: Image Processing (2015)
Jon Sporring, Mahdieh Khanmohammadi, Sune Darkner, Nicoletta Nava, Jens Rondel Nyengaard, Eva Bjorn Wedel Jensen
Estimating the thickness of ultra thin sections for electron microscopy by image statistics. ISBI (2014)
Akshay Pai, Stefan Sommer, Sune Darkner, Lauge Sørensen, Jon Sporring, Mads Nielsen
Stepwise Inverse Consistent Euler's Scheme for Diffeomorphic Image Registration. WBIR (2014)
Dídac R. Arbonès, Henrik G. Jensen, Annika Loft, Per Munck af Rosenschöld, Anders E. Hansen, Christian Igel, Sune Darkner
Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer. Medical Imaging: Image Processing (2014)
Akshay Pai, Lauge Sørensen, Sune Darkner, Peter Mysling, Dan R. Jørgensen, Erik B. Dam, Martin Lillholm, Joonmi Oh, Gennan Chen, Joyce Suhy, Jon Sporring, Mads Nielsen
Cube propagation for focal brain atrophy estimation. ISBI (2013)
Stefan Sommer, Mads Nielsen, Sune Darkner, Xavier Pennec
Higher-Order Momentum Distributions and Locally Affine LDDMM Registration. SIAM J. Imaging Sci. 6 (1) (2013)
Sune Darkner, Jon Sporring
Locally Orderless Registration. IEEE Trans. Pattern Anal. Mach. Intell. 35 (6) (2013)
Peter Mysling, Sune Darkner, Jon Sporring, Erik Dam, Martin Lillholm
Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach. Medical Imaging: Image Processing (2013)
Sune Darkner, Jon Sporring
Locally Orderless Registration CoRR (2012)
Sune Darkner, Line Harder Clemmensen
Data Driven Constraints for the SVM. MLMI (2012)
Anders Boesen Lindbo Larsen, Sune Darkner, Anders Lindbjerg Dahl, Kim Steenstrup Pedersen
Jet-Based Local Image Descriptors. ECCV (3) (2012)
Sune Darkner, Kenny Erleben
A hyper elasticity method for interactive virtual design of hearing aids - A parallel method for general non-linear hyper elasticity modeling. Vis. Comput. 27 (6-8) (2011)
Sune Darkner, Michael Sass Hansen, Rasmus Larsen, Mads Fogtmann Hansen
Efficient Hyperelastic Regularization for Registration. SCIA (2011)
Sune Darkner, Jon Sporring
Generalized Partial Volume: An Inferior Density Estimator to Parzen Windows for Normalized Mutual Information. IPMI (2011)
Stefan Sommer, Mads Nielsen, Sune Darkner, Xavier Pennec
Higher Order Kernels and Locally Affine LDDMM Registration CoRR (2011)
Hildur Ólafsdóttir, Henrik Pedersen, Michael Sass Hansen, Mark Lyksborg, Mads Fogtmann Hansen, Sune Darkner, Rasmus Larsen
Registration-based interpolation applied to cardiac MRI. Medical Imaging: Image Processing (2010)
Sune Darkner, Anders Bjorholm Dahl, Rasmus Larsen, Arnold Skimminge, Ellen Garde, Gunhild Waldemar
Local Segmentation by Large Scale Hypothesis Testing - Segmentation as Outlier Detection. VISAPP (2) (2010)
Søren G. H. Erbou, Sune Darkner, Jurgen Fripp, Sébastien Ourselin, Bjarne K. Ersbøll
Estimation of shape model parameters for 3D surfaces. ISBI (2008)
Sune Darkner, Mert R. Sabuncu, Polina Golland, Rasmus R. Paulsen, Rasmus Larsen
Analysis of Surfaces Using Constrained Regression Models. MICCAI (1) (2008)
Sune Darkner, Martin Vester-Christensen, Rasmus R. Paulsen, Rasmus Larsen
Non-rigid registration of 2D manifolds in 3D Euclidian space. Medical Imaging: Image Processing (2008)
Sune Darkner, Dan Witzner Hansen, Rasmus R. Paulsen, Rasmus Larsen
Robust registration for change detection. Medical Imaging: Image Processing (2008)
Martin Vester-Christensen, Søren G. H. Erbou, Sune Darkner, Rasmus Larsen
Accelerated 3D image registration. Medical Imaging: Image Processing (2007)
Sune Darkner, Rasmus Larsen, Rasmus R. Paulsen
Analysis of Deformation of the Human Ear and Canal Caused by Mandibular Movement. MICCAI (2) (2007)
Fatih Kahraman, Muhittin Gökmen, Sune Darkner, Rasmus Larsen
An Active Illumination and Appearance (AIA) Model for Face Alignment. CVPR (2007)
Sune Darkner, Martin Vester-Christensen, Rasmus Larsen, Rasmus R. Paulsen
Evaluating a method for automated rigid registration. Medical Imaging: Image Processing (2007)
Rasmus Larsen, Mikkel B. Stegmann, Sune Darkner, Søren Forchhammer, Timothy F. Cootes, Bjarne K. Ersbøll
Texture enhanced appearance models. Comput. Vis. Image Underst. 106 (1) (2007)
Sune Darkner, Rasmus Larsen, Mikkel B. Stegmann, Bjarne K. Ersbøll
Wedgelet Enhanced Appearance Models. CVPR Workshops (2004)
Rasmus Larsen, Klaus Baggesen Hilger, Karl Skoglund, Sune Darkner, Rasmus R. Paulsen, Mikkel B. Stegmann, Brian Lading, Hans Henrik Thodberg, Hrafnkell Eiriksson
Some Issues of Biological Shape Modelling with Applications. SCIA (2003)