Simone Marini

Publication Activity (10 Years)

Years Active: 2000-2025
Publications (10 Years): 32

Top Topics

Amino Acid Composition

Image Enhancement

Machine Learning

Top Venues

Publications

Michele Ferrari, Daniele D'Agostino, Jacopo Aguzzi, Simone Marini
Underwater Mediterranean image analysis based on the compute continuum paradigm. Future Gener. Comput. Syst. 162 (2025)
Luciano Ortenzi, Jacopo Aguzzi, Corrado Costa, Simone Marini, Daniele D'Agostino, Laurenz Thomsen, Fabio C. De Leo, Paulo V. Correa, Damianos Chatzievangelou
Automated species classification and counting by deep-sea mobile crawler platforms using YOLO. Ecol. Informatics 82 (2024)
Chaoyue Sun, Yiyang Liu, Christina Parisi, Rebecca Fisk-Hoffman, Marco Salemi, Ruogu Fang, Brandi Danforth, Mattia Prosperi, Simone Marini
Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks. BIOSTEC (2) (2024)
Inyoung Jun, Scott A. Cohen, Sarah E. Ser, Simone Marini, Robert J. Lucero, Jiang Bian, Mattia Prosperi
Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data. CDPD (2023)
Vanesa López-Vázquez, José Manuel López-Guede, Simone Marini, Emanuela Fanelli, Espen Johnsen, Jacopo Aguzzi
Correction: Lopez-Vazquez et al. Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories. Sensors 2020, 20, 726. Sensors 23 (1) (2023)
Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm, Simone Marini, Mattia C. F. Prosperi, Noelle R. Noyes, Paul S. Morley, Christina Boucher
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic Acids Res. 51 (D1) (2023)
Mattia C. F. Prosperi, Brittany Rife Magalis, Simone Marini, Marco Salemi
Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies. BIBM (2022)
Simone Marini, Rodrigo A. Mora, Christina Boucher, Noelle Robertson Noyes, Mattia C. F. Prosperi
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. Briefings Bioinform. 23 (2) (2022)
Mattia C. F. Prosperi, Christina Boucher, Jiang Bian, Simone Marini
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. Artif. Intell. Medicine 130 (2022)
Giovanna Nicora, Simone Marini, Marco Salemi, Riccardo Bellazzi
Dynamic Prediction of Non-Neutral SARS-Cov-2 Variants Using Incremental Machine Learning. MIE (2022)
Inyoung Jun, Simone Marini, Christina Boucher, J. Glenn Morris, Jiang Bian, Mattia C. F. Prosperi
Joint Application of the Target Trial Causal Framework and Machine Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute Bacterial Skin and Skin Structure Infections due to Methicillin-resistant Staphylococcus aureus. CoRR (2022)
Mattia C. F. Prosperi, Jie Xu, Jingchuan Serena Guo, Jiang Bian, Wei-Han William Chen, Shantrel Canidate, Simone Marini, Mo Wang
Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods. BIBM (2022)
Simone Marini, Carla Mavian, Alberto Riva, Mattia C. F. Prosperi, Marco Salemi, Brittany Rife Magalis
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics. Bioinform. 38 (3) (2022)
Mattia C. F. Prosperi, Simone Marini, Christina Boucher
Fast and exact quantification of motif occurrences in biological sequences. BMC Bioinform. 22 (1) (2021)
Mattia C. F. Prosperi, Simone Marini
KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data. BHI (2021)
Jacopo Aguzzi, Corrado Costa, Marcello Calisti, Fabrizio Vecchi, Lewis Dartnell, Valerio Funari, Peter Weiss, Kathrin Nowak, Sergio Stefanni, Damianos Chatzievangelou, Roberto Danovaro, Simone Marini, Helena Gomes
Research Trends and Future Perspectives in Marine Biomimicking Robotics. Sensors 21 (11) (2021)
Mattia C. F. Prosperi, Simone Marini, Christina Boucher, Jiang Bian
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. CoRR (2021)
Jacopo Aguzzi, Jan Albiez, Sascha Flögel, Olav Rune Godø, Endre Grimsbø, Simone Marini, Olaf Pfannkuche, Erik Rodríguez, Laurenz Thomsen, Terje Torkelsen, Javier Valencia, Vanesa López-Vázquez, Henning Wehde, Guosong Zhang
A Flexible Autonomous Robotic Observatory Infrastructure for Bentho-Pelagic Monitoring. Sensors 20 (6) (2020)
Vanesa López-Vázquez, José Manuel López-Guede, Simone Marini, Emanuela Fanelli, Espen Johnsen, Jacopo Aguzzi
Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories. Sensors 20 (3) (2020)
Jacopo Aguzzi, Damianos Chatzievangelou, Marco Francescangeli, Simone Marini, Federico Bonofiglio, Joaquín del Río, Roberto Danovaro
The Hierarchic Treatment of Marine Ecological Information from Spatial Networks of Benthic Platforms. Sensors 20 (6) (2020)
Ander Zuazo, Jordi Grinyó, Vanesa López-Vázquez, Erik Rodríguez, Corrado Costa, Luciano Ortenzi, Sascha Flögel, Javier Valencia, Simone Marini, Guosong Zhang, Henning Wehde, Jacopo Aguzzi
An Automated Pipeline for Image Processing and Data Treatment to Track Activity Rhythms of Paragorgia arborea in Relation to Hydrographic Conditions. Sensors 20 (21) (2020)
Emanuela Fanelli, Jacopo Aguzzi, Simone Marini, Joaquín del Río, Marc Nogueras, Simonepietro Canese, Sergio Stefanni, Roberto Danovaro, Fabio Conversano
Towards Naples Ecological REsearch for Augmented Observatories (NEREA): The NEREA-Fix Module, a Stand-Alone Platform for Long-Term Deep-Sea Ecosystem Monitoring. Sensors 20 (10) (2020)
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu
Protease target prediction via matrix factorization. Bioinform. 35 (6) (2019)
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 20 (5) (2019)
Giovanna Nicora, Simone Marini, Ivan Limongelli, Ettore Rizzo, Stefano Montoli, Francesca Floriana Tricomi, Riccardo Bellazzi
A Semi-supervised Learning Approach for Pan-Cancer Somatic Genomic Variant Classification. AIME (2019)
Dmitry A. Konovalov, Alzayat Saleh, Michael Bradley, Mangalam Sankupellay, Simone Marini, Marcus Sheaves
Underwater Fish Detection with Weak Multi-Domain Supervision. IJCNN (2019)
Dmitry A. Konovalov, Alzayat Saleh, Michael Bradley, Mangalam Sankupellay, Simone Marini, Marcus Sheaves
Underwater Fish Detection with Weak Multi-Domain Supervision. CoRR (2019)
Enea Parimbelli, Simone Marini, Lucia Sacchi, Riccardo Bellazzi
Patient similarity for precision medicine: A systematic review. J. Biomed. Informatics 83 (2018)
Simone Marini, Nelson Nazzicari, Filippo Biscarini, Guang-Zhong Wang
Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity. Bioinform. 33 (12) (2017)
Danila Vella, Simone Marini, Francesca Vitali, Riccardo Bellazzi
MTopGO: a tool for module identification in PPI Networks. PeerJ Prepr. 5 (2017)
Lorenzo Corgnati, Simone Marini, Luca Mazzei, Ennio Ottaviani, Stefano Aliani, Alessandra Conversi, Annalisa Griffa
Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton. Sensors 16 (12) (2016)
Simone Marini, Arianna Dagliati, Lucia Sacchi, Riccardo Bellazzi
Learning T2D Evolving Complexity from EMR and Administrative Data by Means of Continuous Time Bayesian Networks. HEALTHINF (2016)
Ivan Limongelli, Simone Marini, Riccardo Bellazzi
PaPI: pseudo amino acid composition to score human protein-coding variants. BMC Bioinform. 16 (2015)
Simone Marini, Emanuele Trifoglio, Nicola Barbarini, Francesco Sambo, Barbara Di Camillo, Alberto Malovini, Marco Manfrini, Claudio Cobelli, Riccardo Bellazzi
A Dynamic Bayesian Network model for long-term simulation of clinical complications in type 1 diabetes. J. Biomed. Informatics 57 (2015)
Simone Marini, Ivan Limongelli, Ettore Rizzo, Tan Da, Riccardo Bellazzi
A Genomic Data Fusion Framework to Exploit Rare and Common Variants for Association Discovery. AIME (2015)
Maria Francesca Zini, Nadia Pisanti, E. Biasci, A. Podda, V. Mey, F. Piras, G. L. L'Abbate, Simone Marini, D. Fratta, S. Bonaretti, S. Trasciatti
Preclinical Tests for Cerebral Stroke. ASONAM (2015)
Lorenzo Corgnati, Luca Mazzei, Simone Marini, Stefano Aliani, Alessandra Conversi, Annalisa Griffa, Bruno Isoppo, Ennio Ottaviani
Automated Gelatinous Zooplankton Acquisition and Recognition. CVAUI@ICPR (2014)
Luca Mazzei, Simone Marini, Jessica Craig, Jacopo Aguzzi, Emanuela Fanelli, Imants G. Priede
Automated Video Imaging System for Counting Deep-Sea Bioluminescence Organisms Events. CVAUI@ICPR (2014)
Simone Marini, Alessandra Conversi
Understanding Zooplankton Long Term Variability through Genetic Programming. EvoBIO (2012)
Stephan Kiefer, Jochen Rauch, Riccardo Albertoni, Marco Attene, Franca Giannini, Simone Marini, Luc Schneider, Carlos Mesquita, Xin Xing
An Ontology-Driven Search Module for Accessing Chronic Pathology Literature. OTM Workshops (2011)
Simone Marini, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno
Spectral feature selection for shape characterization and classification. Vis. Comput. 27 (11) (2011)
Marco Attene, Simone Marini, Michela Spagnuolo, Bianca Falcidieno
Part-in-whole 3D shape matching and docking. Vis. Comput. 27 (11) (2011)
Stephan Kiefer, Jochen Rauch, Riccardo Albertoni, Marco Attene, Franca Giannini, Simone Marini, Luc Schneider, Carlos Mesquita, Xin Xing, Michael Lawo
The CHRONIOUS Ontology-Driven Search Tool: Enabling Access to Focused and Up-to-Date Healthcare Literature CoRR (2011)
Simone Marini, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno
Feature Selection for Enhanced Spectral Shape Comparison . 3DOR@Eurographics (2010)
Marco Attene, Simone Marini, Michela Spagnuolo, Bianca Falcidieno
The Fast Reject Schema for Part-in-Whole 3D Shape Matching. 3DOR@Eurographics (2010)
Alfredo Ferreira, Simone Marini, Marco Attene, Manuel J. Fonseca, Michela Spagnuolo, Joaquim A. Jorge, Bianca Falcidieno
Thesaurus-based 3D Object Retrieval with Part-in-Whole Matching. Int. J. Comput. Vis. 89 (2-3) (2010)
Daniela Giorgi, Marco Attene, Giuseppe Patanè, Simone Marini, Corrado Pizzi, Silvia Biasotti, Michela Spagnuolo, Bianca Falcidieno, Marco Corvi, L. Usai, L. Roncarolo, Giovanni Garibotto
A Critical Assessment of 2D and 3D Face Recognition Algorithms. AVSS (2009)
J. Hartveldt, Michela Spagnuolo, Apostolos Axenopoulos, Silvia Biasotti, Petros Daras, Helin Dutagaci, Takahiko Furuya, Afzal Godil, Xiaolan Li, Athanasios Mademlis, Simone Marini, Thibault Napoléon, Ryutarou Ohbuchi, Masaki Tezuka
SHREC'09 Track: Structural Shape Retrieval on Watertight Models. 3DOR@Eurographics (2009)
Daniela Giorgi, Simone Marini
SHape REtrieval contest 2008: Classification of watertight models. Shape Modeling International (2008)
Silvia Biasotti, Daniela Giorgi, Simone Marini, Michela Spagnuolo, Bianca Falcidieno
3D Classification Via Structural Prototypes. SAMT (2007)
Silvia Biasotti, Bianca Falcidieno, Patrizio Frosini, Daniela Giorgi, Claudia Landi, Simone Marini, Giuseppe Patanè, Michela Spagnuolo
3D Shape Description and Matching Based on Properties of Real Functions. Eurographics (Tutorials) (2007)
Simone Marini, Michela Spagnuolo, Bianca Falcidieno
Structural Shape Prototypes for the Automatic Classification of 3D Objects. IEEE Computer Graphics and Applications 27 (4) (2007)
Simone Marini, Silvia Biasotti, Bianca Falcidieno
Partial Matching by Structural Descriptors. Content-Based Retrieval (2006)
Silvia Biasotti, Daniela Giorgi, Simone Marini, Michela Spagnuolo, Bianca Falcidieno
A Comparison Framework for 3D Object Classification Methods. MRCS (2006)
Silvia Biasotti, Simone Marini, Michela Spagnuolo, Bianca Falcidieno
Sub-part correspondence by structural descriptors of 3D shapes. Comput. Aided Des. 38 (9) (2006)
Silvia Biasotti, Simone Marini
Sub-part correspondence using structure and geometry. Eurographics Italian Chapter Conference (2006)
Michela Spagnuolo, Silvia Biasotti, Bianca Falcidieno, Simone Marini
Structural Descriptors for 3D Shapes. Content-Based Retrieval (2006)
Simone Marini, Michela Spagnuolo, Bianca Falcidieno
From Exact to Approximate Maximum Common Subgraph. GbRPR (2005)
Silvia Biasotti, Simone Marini
3D object comparison based on shape descriptors. Int. J. Comput. Appl. Technol. 23 (2-4) (2005)
Silvia Biasotti, Simone Marini, Michela Mortara, Giuseppe Patanè
An overview on properties and efficacy of topological skeletons in Shape Modelling. Shape Modeling International (2003)
Silvia Biasotti, Simone Marini, Michela Mortara, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno
3D Shape Matching through Topological Structures. DGCI (2003)
Simone Marini, Maurizio Martelli, Viviana Mascardi, Floriano Zini
Specification of Heterogeneous Agent Architectures. ATAL (2000)
Simone Marini, Maurizio Martelli, Viviana Mascardi, Floriano Zini
HEMASL: A Flexible Language to Specify Heterogeneous Agents. WOA (2000)