Mayumi Kamada

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 8

Top Topics

Medical Knowledge

Structural Motifs

Top Venues

Briefings Bioinform.

Publications

Aya Nakamura, Ryosuke Kojima, Yuji Okamoto, Eiichiro Uchino, Yohei Mineharu, Yohei Harada, Mayumi Kamada, Manabu Muto, Motoko Yanagita, Yasushi Okuno
A New Deep State-Space Analysis Framework for Patient Latent State Estimation and Classification from EHR Time Series Data. CoRR (2023)
Kazuma Inoue, Ryosuke Kojima, Mayumi Kamada, Yasushi Okuno
An end-to-end framework for gene expression classification by integrating a background knowledge graph: application to cancer prognosis prediction. CoRR (2023)
Narumi Hatano, Mayumi Kamada, Ryosuke Kojima, Yasushi Okuno
Network-based prediction approach for cancer-specific driver missense mutations using a graph neural network. BMC Bioinform. 24 (1) (2023)
Atsuko Takagi, Mayumi Kamada, Eri Hamatani, Ryosuke Kojima, Yasushi Okuno
GraphIX: Graph-based In silico XAI(explainable artificial intelligence) for drug repositioning from biopharmaceutical network. CoRR (2022)
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 20 (5) (2019)
Mayumi Kamada, Toshiaki Katayama, Shuichi Kawashima, Ryosuke Kojima, Masahiko Nakatsui, Yasushi Okuno
Med2RDF: Semantic Biomedical Knowledge-base and APIs for the Clinical Genome Medicine. SWAT4HCLS (2019)
Morihiro Hayashida, Noriyuki Okada, Mayumi Kamada, Hitoshi Koyano
Improving conditional random field model for prediction of protein-RNA residue-base contacts. Quant. Biol. 6 (2) (2018)
Mayumi Kamada, Toshiaki Katayama, Shuichi Kawashima, Ryosuke Kojima, Masahiko Nakatsui, Yasushi Okuno
Construction of Knowledge-Base for Clinical Interpretation of Genomic Variants. SWAT4LS (2017)
Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso. BMC Syst. Biol. 7 (S-2) (2013)
Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
Predicting protein-RNA residue-base contacts using two-dimensional conditional random field. ISB (2012)
Ozgur Demir-Kavuk, Mayumi Kamada, Tatsuya Akutsu, Ernst-Walter Knapp
Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features. BMC Bioinform. 12 (2011)
Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
Conditional random field approach to prediction of protein-protein interactions using domain information. BMC Syst. Biol. 5 (S-1) (2011)
Mayumi Kamada, Sachi Kimura, Mikito Toda, Masami Takata, Kazuki Joe
Clustering the Temporal Sequences Feature of 3D Protein Structure. PDPTA (2009)
Mayumi Kamada, Natsu Nakajima, Chisato Ishikawa, Masami Takata, Kazuki Joe
Construction of an Ethanol-Tolerant Yeast Model using the E-cell System. PDPTA (2008)