Predicting protein-RNA residue-base contacts using two-dimensional conditional random field.
Morihiro HayashidaMayumi KamadaJiangning SongTatsuya AkutsuPublished in: ISB (2012)
Keyphrases
- conditional random fields
- predicting protein
- secondary structure
- amino acids
- protein structure prediction
- crf model
- protein sequences
- long range
- probabilistic model
- graphical models
- protein structure
- hidden markov models
- information extraction
- higher order
- random fields
- amino acid sequences
- computational methods
- protein folding
- markov random field
- protein function
- pairwise
- protein protein interactions
- protein interaction
- generative model
- segmentation method
- machine learning
- parameter estimation
- superpixels
- computational biology
- sequence alignment
- co occurrence