Ray Luo

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 12

Top Topics

Intrinsically Disordered

Protein Sequences

Amino Acid Sequences

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

J. Comput. Phys.

Publications

Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen
Recent Force Field Strategies for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 61 (3) (2021)
Shiji Zhao, Andrew J. Schaub, Shiou-Chuan Tsai, Ray Luo
Development of a Pantetheine Force Field Library for Molecular Modeling. J. Chem. Inf. Model. 61 (2) (2021)
Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 60 (4) (2020)
Haixin Wei, Ray Luo, Ruxi Qi
An efficient second-order poisson-boltzmann method. J. Comput. Chem. 40 (12) (2019)
Quan Li, Ray Luo, Hai-Feng Chen
Dynamical important residue network (DIRN): network inference via conformational change. Bioinform. 35 (22) (2019)
Ruxi Qi, Ray Luo
Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing Units. J. Chem. Inf. Model. 59 (1) (2019)
D'artagnan Greene, Ruxi Qi, Remy Nguyen, Tianyin Qiu, Ray Luo
Heterogeneous Dielectric Implicit Membrane Model for the Calculation of MMPBSA Binding Free Energies. J. Chem. Inf. Model. 59 (6) (2019)
Dong Song, Ray Luo, Hai-Feng Chen
Improves the Conformer Sampling of Intrinsically Disordered Proteins. J. Chem. Inf. Model. 57 (5) (2017)
Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. J. Chem. Inf. Model. 57 (5) (2017)
Changhao Wang, Li Xiao, Ray Luo
Numerical interpretation of molecular surface field in dielectric modeling of solvation. J. Comput. Chem. 38 (14) (2017)
Changhao Wang, Peter H. Nguyen, Kevin Pham, Danielle Huynh, Thanh-Binh Nancy Le, Hongli Wang, Pengyu Y. Ren, Ray Luo
Calculating protein-ligand binding affinities with MMPBSA: Method and error analysis. J. Comput. Chem. 37 (27) (2016)
Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. J. Chem. Inf. Model. 56 (6) (2016)
Zhilin Li, Li Xiao, Qin Cai, Hongkai Zhao, Ray Luo
A semi-implicit augmented IIM for Navier-Stokes equations with open, traction, or free boundary conditions. J. Comput. Phys. 297 (2015)
Wesley M. Botello-Smith, Ray Luo
Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation. J. Chem. Inf. Model. 55 (10) (2015)
Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen
Force Field for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 55 (5) (2015)
Jun Wang, Ray Luo
Assessment of linear finite-difference Poisson-Boltzmann solvers. J. Comput. Chem. 31 (8) (2010)
Samuel A. Danziger, Sanjay Joshua Swamidass, Jue Zeng, Lawrence R. Dearth, Qiang Lu, Jonathan H. Chen, Jianlin Cheng, Vinh P. Hoang, Hiroto Saigo, Ray Luo, Pierre Baldi, Rainer K. Brachmann, Richard H. Lathrop
Functional Census of Mutation Sequence Spaces: The Example of p53 Cancer Rescue Mutants. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (2) (2006)
David A. Case, Thomas E. Cheatham III, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M. Merz Jr., Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods
The Amber biomolecular simulation programs. J. Comput. Chem. 26 (16) (2005)
Yong Duan, Chun Wu, Shibasish Chowdhury, Mathew C. Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Taisung Lee, James W. Caldwell, Junmei Wang, Peter A. Kollman
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24 (16) (2003)
Ray Luo, Laurent David, Michael K. Gilson
Accelerated Poisson-Boltzmann calculations for static and dynamic systems. J. Comput. Chem. 23 (13) (2002)
Laurent David, Ray Luo, Michael K. Gilson
Ligand-receptor docking with the Mining Minima optimizer. J. Comput. Aided Mol. Des. 15 (2) (2001)
Laurent David, Ray Luo, Michael K. Gilson
Comparison of generalized born and poisson models: Energetics and dynamics of HIV protease. J. Comput. Chem. 21 (4) (2000)