Hai-Feng Chen

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 24

Top Topics

Protein Interaction

Intrinsically Disordered

Comparative Evaluation

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

Publications

Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen
protein design method and function validation. Briefings Bioinform. 25 (3) (2024)
Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen
Multi-indicator comparative evaluation for deep learning-based protein sequence design methods. Bioinform. 40 (2) (2024)
Mueed Ur Rahman, Saira Bano, Xiaokun Hong, Ruo-Xu Gu, Hai-Feng Chen
Based on Force Field Parameter of 5-Cyano-Tryptophan. J. Chem. Inf. Model. 64 (9) (2024)
Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen
Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins. J. Chem. Inf. Model. 63 (5) (2023)
Junjie Zhu, Zhengxin Li, Haowei Tong, Zhouyu Lu, Ningjie Zhang, Ting Wei, Hai-Feng Chen
Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling. Briefings Bioinform. 25 (1) (2023)
Hai-Feng Chen, Lv Zhang, Shuai Wang, Shan-Shan Shi
Development and Application of Offshore Trade Authenticity Verification Platform Based on Blockchain. DSIE (2023)
Xiaoyue Ji, Hao Liu, Yangpeng Zhang, Jun Chen, Hai-Feng Chen
Personal Precise Force Field for Intrinsically Disordered and Ordered Proteins Based on Deep Learning. J. Chem. Inf. Model. 63 (1) (2023)
Xiaoyue Ji, Xiaochen Cui, Zhengxin Li, Taeyoung Choi, Ying Wang, Wen Xiao, Yunshuo Zhao, Jinyin Zha, Jian Zhang, Hai-Feng Chen, Zhengtian Yu
Research and Evaluation of the Allosteric Protein-Specific Force Field Based on a Pre-Training Deep Learning Model. J. Chem. Inf. Model. 63 (8) (2023)
Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen
Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model. J. Chem. Inf. Model. 63 (2) (2023)
Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li, Jian Zhang, Hai-Feng Chen
PTMint database of experimentally verified PTM regulation on protein-protein interaction. Bioinform. 39 (1) (2023)
Jun Chen, Hao Liu, Xiaochen Cui, Zhengxin Li, Hai-Feng Chen
RNA-Specific Force Field Optimization with CMAP and Reweighting. J. Chem. Inf. Model. 62 (2) (2022)
Xiaochen Cui, Hao Liu, Hai-Feng Chen
Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization. J. Chem. Inf. Model. 62 (20) (2022)
Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen
Recent Force Field Strategies for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 61 (3) (2021)
Junxi Mu, Zhengsong Pan, Hai-Feng Chen
Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 61 (10) (2021)
Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 60 (4) (2020)
Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 60 (10) (2020)
Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen
Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins. J. Chem. Inf. Model. 59 (11) (2019)
Quan Li, Ray Luo, Hai-Feng Chen
Dynamical important residue network (DIRN): network inference via conformational change. Bioinform. 35 (22) (2019)
Ashfaq Ur Rehman, Humaira Rafiq, Mueed Ur Rahman, Jiayi Li, Hao Liu, Shenggan Luo, Taaha Arshad, Abdul Wadood, Hai-Feng Chen
Gain-of-Function SHP2 E76Q Mutant Rescuing Autoinhibition Mechanism Associated with Juvenile Myelomonocytic Leukemia. J. Chem. Inf. Model. 59 (7) (2019)
Ashfaq Ur Rehman, Muhammad Tahir Khan, Hao Liu, Abdul Wadood, Shaukat Iqbal Malik, Hai-Feng Chen
Exploring the Pyrazinamide Drug Resistance Mechanism of Clinical Mutants T370P and W403G in Ribosomal Protein S1 ofMycobacterium tuberculosis. J. Chem. Inf. Model. 59 (4) (2019)
Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
Inhibitory mechanism of 5-bromo-3-indoleacetic acid for non-structural-3 helicase hepatitis C virus with dynamics correlation network analysis. Comput. Biol. Chem. 77 (2018)
Dong Song, Ray Luo, Hai-Feng Chen
Improves the Conformer Sampling of Intrinsically Disordered Proteins. J. Chem. Inf. Model. 57 (5) (2017)
Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. J. Chem. Inf. Model. 57 (5) (2017)
Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. J. Chem. Inf. Model. 56 (6) (2016)
Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen
Force Field for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 55 (5) (2015)
Hai-Feng Chen
Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril. Comput. Biol. Chem. 33 (1) (2009)